[gradsusr] grads on ubuntu 14.04 error
yogesh kumkar
yogeshkumkar at gmail.com
Fri Sep 23 06:34:06 EDT 2016
Dear Jennifer,
Thanks a lot. I downloaded the pre-compiled binary 2.1.a3 and it works well.
Thanks,
Yogesh
On Thu, Sep 22, 2016 at 4:28 PM, Jennifer M Adams <jadams21 at gmu.edu> wrote:
>
> On Sep 22, 2016, at 2:46 AM, yogesh kumkar <yogeshkumkar at gmail.com> wrote:
>
> Dear Jennifer and Kishore,
>
> Thanks for the help but it still does not work.
>
> The symbol warning appears to be from libdap, which is only used by GrADS
> for accessing station data remotely via GDS. If you are not using that
> feature, I wouldn’t worry about it. Now that you’ve got netcdf4, what
> exactly doesn’t work?
>
> By the way, version 2.0.1 is now about 5 years old. So is the version of
> the grib2 library your apt-get build is linked with. There is a LOT your
> build cannot do. If you are running on a unix box, why you don’t just stick
> the pre-compiled binaries from COLA somewhere under your home directory and
> take advantage of 5 years worth of improvements to the software?
> —Jennifer
>
>
>
>
>
> Here is the q config:
>
> yogesh at nature:WorkFigures$ grads
> grads: Symbol `_ZTVN6libdap15BaseTypeFactoryE' has different size in
> shared object, consider re-linking
>
> Grid Analysis and Display System (GrADS) Version 2.0.1
> Copyright (c) 1988-2011 by Brian Doty and the
> Institute for Global Environment and Society (IGES)
> GrADS comes with ABSOLUTELY NO WARRANTY
> See file COPYRIGHT for more information
>
> Config: v2.0.1 little-endian readline printim grib2 netcdf hdf4-sds hdf5
> opendap-grids,stn geotiff shapefile
> Issue 'q config' command for more detailed configuration information
> Landscape mode? ('n' for portrait):
> GX Package Initialization: Size = 11 8.5
> ga-> q config
> Config: v2.0.1 little-endian readline printim grib2 netcdf hdf4-sds hdf5
> opendap-grids,stn geotiff shapefile
> Grid Analysis and Display System (GrADS) Version 2.0.1
> Copyright (c) 1988-2011 by Brian Doty and the
> Institute for Global Environment and Society (IGES)
> This program is distributed WITHOUT ANY WARRANTY
> See file COPYRIGHT for more information.
>
> Built Mon May 20 00:00:54 UTC 2013 for i686-pc-linux-gnu
>
> This version of GrADS has been configured with the following options:
> o Built on a LITTLE ENDIAN machine
> o Athena Widget GUI DISABLED
> o Command line editing ENABLED
> http://tiswww.case.edu/php/chet/readline/rltop.html
> o printim command for image output ENABLED
> http://www.zlib.net
> http://www.libpng.org/pub/png/libpng.html
> http://www.libgd.org/Main_Page
> o GRIB2 interface ENABLED
> http://www.ijg.org
> http://www.ece.uvic.ca/~mdadams/jasper
> http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2
> g2clib-1.2.2
> o NetCDF interface ENABLED
> http://www.unidata.ucar.edu/software/netcdf
> netcdf 4.3.0 of Aug 5 2013 19:26:58 $
> o OPeNDAP gridded data interface ENABLED
> o OPeNDAP station data interface ENABLED
> http://iges.org/grads/gadoc/supplibs.html
> libgadap 2.0
> o HDF4 and HDF5 interfaces ENABLED
> http://hdfgroup.org
> HDF 4.2r10
> HDF5 1.8.11
> o GeoTIFF and KML/TIFF output ENABLED
> http://www.libtiff.org
> http://geotiff.osgeo.org
> o KML contour output ENABLED
> o Shapefile interface ENABLED
> http://shapelib.maptools.org
>
> For additional information please consult http://iges.org/grads
>
> ga->
>
> netcdf library version 4.3.0 of Aug 5 2013 19:26:58 $
>
> Any other suggestions?
>
> Thanks,
> Yogesh
>
> On Wed, Sep 21, 2016 at 4:18 PM, Kishore Ragi <kishoreragi at gmail.com>
> wrote:
>
>>
>> The following should solve your purpose.
>>
>> sudo apt-get uninstall grads
>>
>> sudo apt-get install libhdf5-dev netcdf-bin libnetcdf-dev grads
>>
>> Cheers,
>> Kishore
>>
>>
>> *PhD student in climate science, *
>>
>> *National Institute of Technology, Rourkela, *
>>
>> *India- 769008 *
>>
>>
>>
>>
>>
>>
>> *Phone: +91-8908671881 http://www.researchgate.net/profile/Kishore_Ragi
>> <http://www.researchgate.net/profile/Kishore_Ragi>
>> https://in.linkedin.com/in/kishoreragi
>> <https://in.linkedin.com/in/kishoreragi> http://kishoreragi.webnode.com/
>> <http://kishoreragi.webnode.com/>*
>>
>> On Wed, Sep 21, 2016 at 7:57 PM, Jennifer M Adams <jadams21 at gmu.edu>
>> wrote:
>>
>>> Your ubuntu build is probably not linked with netcdf4, and it probably
>>> also has udunits2 — the user-friendly ‘yum’ install feature on ubuntu does
>>> not install a user-friendly version of GrADS. Better to download a build
>>> from http://cola.gmu.edu/grads/downloads.php and install it yourself.
>>> —Jennifer
>>>
>>> On Sep 21, 2016, at 6:56 AM, yogesh kumkar <yogeshkumkar at gmail.com>
>>> wrote:
>>>
>>> Dear GrADS members/users,
>>>
>>> I have installed grads on my laptop.
>>> The OS is ubuntu 14.04, grads version is 2.0.1
>>> yogesh at nature:WorkFigures$ uname -a
>>> Linux nature 3.13.0-71-generic #114-Ubuntu SMP Tue Dec 1 02:35:20 UTC
>>> 2015 i686 i686 i686 GNU/Linux
>>>
>>> When I run a .gs script, I get the following error and grads quits
>>> without plotting.
>>>
>>> =================================================
>>> grads: Symbol `_ZTVN6libdap15BaseTypeFactoryE' has different size in
>>> shared object, consider re-linking
>>>
>>> Grid Analysis and Display System (GrADS) Version 2.0.1
>>> Copyright (c) 1988-2011 by Brian Doty and the
>>> Institute for Global Environment and Society (IGES)
>>> GrADS comes with ABSOLUTELY NO WARRANTY
>>> See file COPYRIGHT for more information
>>>
>>> Config: v2.0.1 little-endian readline printim grib2 netcdf hdf4-sds hdf5
>>> opendap-grids,stn geotiff shapefile
>>> Issue 'q config' command for more detailed configuration information
>>> Landscape mode? ('n' for portrait):
>>> GX Package Initialization: Size = 11 8.5
>>> ga-> iran-nao.gs
>>> No hardcopy metafile open
>>> All files closed; all defined objects released;
>>> All GrADS attributes have been reinitialized
>>> grads: symbol lookup error: grads: undefined symbol: nc_get_chunk_cache
>>>
>>> ================================================
>>>
>>> The ncdump -c of the precip_mon_mean.nc is
>>>
>>> netcdf precip_mon_mean {
>>> dimensions:
>>> lon = 144 ;
>>> lat = 72 ;
>>> time = 451 ;
>>> variables:
>>> float lat(lat) ;
>>> lat:axis = "Y" ;
>>> lat:standard_name = "latitude" ;
>>> lat:long_name = "Latitude" ;
>>> lat:actual_range = 88.75f, -88.75f ;
>>> lat:units = "degrees_north" ;
>>> float lon(lon) ;
>>> lon:axis = "X" ;
>>> lon:standard_name = "longitude" ;
>>> lon:actual_range = 1.25f, 358.75f ;
>>> lon:long_name = "Longitude" ;
>>> lon:units = "degrees_east" ;
>>> double time(time) ;
>>> time:actual_range = 1569072., 1897776. ;
>>> time:axis = "T" ;
>>> time:standard_name = "time" ;
>>> time:avg_period = "0000-01-00 00:00:00" ;
>>> time:delta_t = "0000-01-00 00:00:00" ;
>>> time:long_name = "Time" ;
>>> time:units = "hours since 1800-01-01 00:00:0.0" ;
>>> float precip(time, lat, lon) ;
>>> precip:_FillValue = -9.96921e+36f ;
>>> precip:actual_range = 0.f, 56.54f ;
>>> precip:parent_stat = "Mean" ;
>>> precip:statistic = "Mean" ;
>>> precip:level_desc = "Surface" ;
>>> precip:dataset = "CPC Merged Analysis of Precipitation Standard"
>>> ;
>>> precip:var_desc = "Precipitation" ;
>>> precip:least_significant_digit = 2s ;
>>> precip:precision = 2s ;
>>> precip:missing_value = -9.96921e+36f ;
>>> precip:scale_factor = 1.f ;
>>> precip:add_offset = 0.f ;
>>> precip:units = "mm/day" ;
>>> precip:valid_range = 0.f, 70.f ;
>>> precip:long_name = "Average Monthly Rate of Precipitation" ;
>>>
>>> // global attributes:
>>> :history = "update 8/2016 V1608" ;
>>> :version = "V1608" ;
>>> :dataset_title = "CPC Merged Analysis of Precipitation" ;
>>> :References = "http://www.esrl.noaa.gov/psd/
>>> data/gridded/data.cmap.html" ;
>>> :documentation = "http://www.esrl.noaa.gov/psd/
>>> data/gridded/data.cmap.html" ;
>>> :source = "ftp ftp.cpc.ncep.noaa.gov precip/cmap/monthly" ;
>>> :platform = "Analyses" ;
>>> :comment = "Data support section: ds124" ;
>>> :creation_date = "Mon Sep 19 16:12:02 IRDT 2016" ;
>>> :NCL_Version = "6.1.2" ;
>>> :system = "Linux nature 3.13.0-71-generic #114-Ubuntu SMP Tue
>>> Dec 1 02:35:20 UTC 2015 i686 i686 i686 GNU/Linux" ;
>>> :Conventions = "COARDS" ;
>>> :hdf_source = "precip_mon_mean.hdf" ;
>>> :title = "CPC Merged Analysis of Precipitation (excludes NCEP
>>> Reanalysis)" ;
>>> data:
>>>
>>> lat = 88.75, 86.25, 83.75, 81.25, 78.75, 76.25, 73.75, 71.25, 68.75,
>>> 66.25,
>>>
>>> Can you please advise me how I can fix this.
>>>
>>> Thanks,
>>> Yogesh
>>>
>>> --
>>> =============================
>>>
>>> YOGESH KUMKAR
>>> Centro Euro-Mediterraneo sui Cambiamenti Climatici
>>> via Augusto Imperatore 16,
>>> 73100 Lecce, Italy
>>> Mobile: +39 3248739936
>>> Phone: +39 0832 671020
>>> yogesh.kumkar at cmcc.it
>>>
>>> ********************************************************
>>> +--------------------------------------------------------+
>>> Think before Print
>>> 1 ream of paper = 6% of a tree and 5.4kg CO2 in the atmosphere
>>> 3 sheets of A4 paper = 1 litre of water
>>> +--------------------------------------------------------+
>>> _______________________________________________
>>> gradsusr mailing list
>>> gradsusr at gradsusr.org
>>> http://gradsusr.org/mailman/listinfo/gradsusr
>>>
>>>
>>> --
>>> Jennifer Miletta Adams
>>> Center for Ocean-Land-Atmosphere Studies (COLA)
>>> George Mason University
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> gradsusr mailing list
>>> gradsusr at gradsusr.org
>>> http://gradsusr.org/mailman/listinfo/gradsusr
>>>
>>>
>>
>> _______________________________________________
>> gradsusr mailing list
>> gradsusr at gradsusr.org
>> http://gradsusr.org/mailman/listinfo/gradsusr
>>
>>
>
>
> --
> =============================
>
> YOGESH KUMKAR
> Centro Euro-Mediterraneo sui Cambiamenti Climatici
> via Augusto Imperatore 16,
> 73100 Lecce, Italy
> Mobile: +39 3248739936
> Phone: +39 0832 671020
> yogesh.kumkar at cmcc.it
>
> ********************************************************
> +--------------------------------------------------------+
> Think before Print
> 1 ream of paper = 6% of a tree and 5.4kg CO2 in the atmosphere
> 3 sheets of A4 paper = 1 litre of water
> +--------------------------------------------------------+
> _______________________________________________
> gradsusr mailing list
> gradsusr at gradsusr.org
> http://gradsusr.org/mailman/listinfo/gradsusr
>
>
> --
> Jennifer Miletta Adams
> Center for Ocean-Land-Atmosphere Studies (COLA)
> George Mason University
>
>
>
>
> _______________________________________________
> gradsusr mailing list
> gradsusr at gradsusr.org
> http://gradsusr.org/mailman/listinfo/gradsusr
>
>
--
=============================
YOGESH KUMKAR
Centro Euro-Mediterraneo sui Cambiamenti Climatici
via Augusto Imperatore 16,
73100 Lecce, Italy
Mobile: +39 3248739936
Phone: +39 0832 671020
yogesh.kumkar at cmcc.it
********************************************************
+--------------------------------------------------------+
Think before Print
1 ream of paper = 6% of a tree and 5.4kg CO2 in the atmosphere
3 sheets of A4 paper = 1 litre of water
+--------------------------------------------------------+
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