[gradsusr] gradsusr Digest, Vol 75, Issue 25
Jennifer M Adams
jadams21 at gmu.edu
Thu Jun 2 08:04:07 EDT 2016
On May 30, 2016, at 1:54 AM, Peter Tuju <peterenos at ymail.com<mailto:peterenos at ymail.com>> wrote:
Dear all,
I have to work with wrfout from seasonal model run to visualize the products. I successfully created a .ctl file to read in grads, but the problem Is that, I get ?"entire grid undefined " Why this and how to resolve it? For short time model run say 3 days works fine but for seasons I got stuck. Please help!?
'reinit''set display color white''open wrfout.ctl''set gxout shaded''d t2'
Entire Grid Undefined.
The descriptor file is not using templating and points to a single binary file, so if the grid is undefined, it means the data is *actually* undefined. Without knowing too much about WRF output, you are displaying variable t2 (2m temperature), which may not be defined at the initial time step (the analysis), because it is a model-derived variable. Try ‘set t 2’ before your display and see if that changes anything.
The 'sdfopen wrfout_d02_2015-03-01.nc' gives the following message
Scanning self-describing file: wrfout_d02_2015-03-01.nc
udunits(3): syntax error:
-
^
gadsdf: SDF file has no discernable X coordinate.
To open this file with GrADS, use a descriptor file with an XDEF entry.
Documentation is at http://iges.org/grads/gadoc/SDFdescriptorfile.html
Here you are opening a netcdf file, which is different from the data file in your descriptor copied below. The error message from the udunits library suggests something is wrong with the metadata in your file, so you will have to use ’xdfopen’ or ‘open’ with a full descriptor. The documentation page mentioned in the error message explains how to create a descriptor for netcdf files. If you are still having problems reading the netcdf file, then you can repost with the output from your grads session (including the result from ‘q config’ and your error message), the output from 'ncdump -c’ and your new descriptor file.
—Jennifer
Please find the following ctl file, also attached.
dset ^wrfout_d02_2015-03.dat
options byteswapped
undef 1.e30
title OUTPUT FROM WRF V3.8 MODEL
pdef 213 192 lcc -5.019 34.901 107.000 96.500 0.00000 -0.50000 20.00000 12000.000 12000.000
xdef 443 linear 22.91254 0.05405406
ydef 398 linear -15.70837 0.05405406
zdef 47 linear 1 1
tdef 1 linear 00Z01MAR2015 1440MN
VARS 94
XLAT 1 0 LATITUDE, SOUTH IS NEGATIVE (degree_north)
XLONG 1 0 LONGITUDE, WEST IS NEGATIVE (degree_east)
LU_INDEX 1 0 LAND USE CATEGORY (-)
VAR_SSO 1 0 variance of subgrid-scale orography (m2)
U 47 0 x-wind component (m s-1)
V 47 0 y-wind component (m s-1)
W 47 0 z-wind component (m s-1)
PH 47 0 perturbation geopotential (m2 s-2)
PHB 47 0 base-state geopotential (m2 s-2)
T 47 0 perturbation potential temperature (theta-t0) (K)
MU 1 0 perturbation dry air mass in column (Pa)
MUB 1 0 base state dry air mass in column (Pa)
NEST_POS 1 0 - (-)
P 47 0 perturbation pressure (Pa)
PB 47 0 BASE STATE PRESSURE (Pa)
P_HYD 47 0 hydrostatic pressure (Pa)
Q2 1 0 QV at 2 M (kg kg-1)
T2 1 0 TEMP at 2 M (K)
TH2 1 0 POT TEMP at 2 M (K)
PSFC 1 0 SFC PRESSURE (Pa)
U10 1 0 U at 10 M (m s-1)
V10 1 0 V at 10 M (m s-1)
QVAPOR 47 0 Water vapor mixing ratio (kg kg-1)
QCLOUD 47 0 Cloud water mixing ratio (kg kg-1)
QRAIN 47 0 Rain water mixing ratio (kg kg-1)
SHDMAX 1 0 ANNUAL MAX VEG FRACTION (-)
SHDMIN 1 0 ANNUAL MIN VEG FRACTION (-)
SNOALB 1 0 ANNUAL MAX SNOW ALBEDO IN FRACTION (-)
TSLB 4 0 SOIL TEMPERATURE (K)
SMOIS 4 0 SOIL MOISTURE (m3 m-3)
SH2O 4 0 SOIL LIQUID WATER (m3 m-3)
SMCREL 4 0 RELATIVE SOIL MOISTURE (-)
SEAICE 1 0 SEA ICE FLAG (-)
XICEM 1 0 SEA ICE FLAG (PREVIOUS STEP) (-)
SFROFF 1 0 SURFACE RUNOFF (mm)
UDROFF 1 0 UNDERGROUND RUNOFF (mm)
IVGTYP 1 0 DOMINANT VEGETATION CATEGORY (-)
ISLTYP 1 0 DOMINANT SOIL CATEGORY (-)
VEGFRA 1 0 VEGETATION FRACTION (-)
GRDFLX 1 0 GROUND HEAT FLUX (W m-2)
ACGRDFLX 1 0 ACCUMULATED GROUND HEAT FLUX (J m-2)
ACSNOM 1 0 ACCUMULATED MELTED SNOW (kg m-2)
SNOW 1 0 SNOW WATER EQUIVALENT (kg m-2)
SNOWH 1 0 PHYSICAL SNOW DEPTH (m)
CANWAT 1 0 CANOPY WATER (kg m-2)
SSTSK 1 0 SKIN SEA SURFACE TEMPERATURE (K)
COSZEN 1 0 COS of SOLAR ZENITH ANGLE (dimensionless)
LAI 1 0 LEAF AREA INDEX (m-2/m-2)
VAR 1 0 OROGRAPHIC VARIANCE (-)
MAPFAC_M 1 0 Map scale factor on mass grid (-)
MAPFAC_MX 1 0 Map scale factor on mass grid, x direction (-)
MAPFAC_MY 1 0 Map scale factor on mass grid, y direction (-)
MF_VX_INV 1 0 Inverse map scale factor on v-grid, x direction (-)
F 1 0 Coriolis sine latitude term (s-1)
E 1 0 Coriolis cosine latitude term (s-1)
SINALPHA 1 0 Local sine of map rotation (-)
COSALPHA 1 0 Local cosine of map rotation (-)
HGT 1 0 Terrain Height (m)
TSK 1 0 SURFACE SKIN TEMPERATURE (K)
RAINC 1 0 ACCUMULATED TOTAL CUMULUS PRECIPITATION (mm)
RAINSH 1 0 ACCUMULATED SHALLOW CUMULUS PRECIPITATION (mm)
RAINNC 1 0 ACCUMULATED TOTAL GRID SCALE PRECIPITATION (mm)
SNOWNC 1 0 ACCUMULATED TOTAL GRID SCALE SNOW AND ICE (mm)
GRAUPELNC 1 0 ACCUMULATED TOTAL GRID SCALE GRAUPEL (mm)
HAILNC 1 0 ACCUMULATED TOTAL GRID SCALE HAIL (mm)
CLDFRA 47 0 CLOUD FRACTION (-)
SWDOWN 1 0 DOWNWARD SHORT WAVE FLUX AT GROUND SURFACE (W m-2)
GLW 1 0 DOWNWARD LONG WAVE FLUX AT GROUND SURFACE (W m-2)
SWNORM 1 0 NORMAL SHORT WAVE FLUX AT GROUND SURFACE (SLOPE-DEPENDENT) (W m-2)
OLR 1 0 TOA OUTGOING LONG WAVE (W m-2)
ALBEDO 1 0 ALBEDO (-)
CLAT 1 0 COMPUTATIONAL GRID LATITUDE, SOUTH IS NEGATIVE (degree_north)
ALBBCK 1 0 BACKGROUND ALBEDO (-)
EMISS 1 0 SURFACE EMISSIVITY (-)
NOAHRES 1 0 RESIDUAL OF THE NOAH SURFACE ENERGY BUDGET (W m{-2})
TMN 1 0 SOIL TEMPERATURE AT LOWER BOUNDARY (K)
XLAND 1 0 LAND MASK (1 FOR LAND, 2 FOR WATER) (-)
UST 1 0 U* IN SIMILARITY THEORY (m s-1)
PBLH 1 0 PBL HEIGHT (m)
HFX 1 0 UPWARD HEAT FLUX AT THE SURFACE (W m-2)
QFX 1 0 UPWARD MOISTURE FLUX AT THE SURFACE (kg m-2 s-1)
LH 1 0 LATENT HEAT FLUX AT THE SURFACE (W m-2)
ACHFX 1 0 ACCUMULATED UPWARD HEAT FLUX AT THE SURFACE (J m-2)
ACLHF 1 0 ACCUMULATED UPWARD LATENT HEAT FLUX AT THE SURFACE (J m-2)
SNOWC 1 0 FLAG INDICATING SNOW COVERAGE (1 FOR SNOW COVER) (-)
SR 1 0 fraction of frozen precipitation (-)
LANDMASK 1 0 LAND MASK (1 FOR LAND, 0 FOR WATER) (-)
LAKEMASK 1 0 LAKE MASK (1 FOR LAKE, 0 FOR NON-LAKE) (-)
SST 1 0 SEA SURFACE TEMPERATURE (K)
SST_INPUT 1 0 SEA SURFACE TEMPERATURE FROM WRFLOWINPUT FILE (K)
pressure 47 0 Model pressure (hPa)
height 47 0 Model height (km)
tk 47 0 Temperature (K)
tc 47 0 Temperature (C)
ENDVARS
@ global String comment TITLE = OUTPUT FROM WRF V3.8 MODEL
@ global String comment START_DATE = 2015-03-01_00:00:00
@ global String comment SIMULATION_START_DATE = 2015-03-01_00:00:00
@ global String comment WEST-EAST_GRID_DIMENSION = 214
@ global String comment SOUTH-NORTH_GRID_DIMENSION = 193
@ global String comment BOTTOM-TOP_GRID_DIMENSION = 48
@ global String comment DX = 12000.00
@ global String comment DY = 12000.00
@ global String comment SKEBS_ON = 0
@ global String comment SPEC_BDY_FINAL_MU = 1
@ global String comment USE_Q_DIABATIC = 0
@ global String comment GRIDTYPE = C
@ global String comment DIFF_OPT = 1
@ global String comment KM_OPT = 4
@ global String comment DAMP_OPT = 0
@ global String comment DAMPCOEF = 0.20
@ global String comment KHDIF = 0.00
@ global String comment KVDIF = 0.00
@ global String comment MP_PHYSICS = 3
@ global String comment RA_LW_PHYSICS = 1
@ global String comment RA_SW_PHYSICS = 1
@ global String comment SF_SFCLAY_PHYSICS = 1
@ global String comment SF_SURFACE_PHYSICS = 2
@ global String comment BL_PBL_PHYSICS = 1
@ global String comment CU_PHYSICS = 1
@ global String comment SF_LAKE_PHYSICS = 0
@ global String comment SURFACE_INPUT_SOURCE = 3
@ global String comment SST_UPDATE = 1
@ global String comment GRID_FDDA = 0
@ global String comment GFDDA_INTERVAL_M = 0
@ global String comment GFDDA_END_H = 0
@ global String comment GRID_SFDDA = 0
@ global String comment SGFDDA_INTERVAL_M = 0
@ global String comment SGFDDA_END_H = 0
@ global String comment HYPSOMETRIC_OPT = 2
@ global String comment USE_THETA_M = 0
@ global String comment SF_URBAN_PHYSICS = 0
@ global String comment SHCU_PHYSICS = 0
@ global String comment MFSHCONV = 0
@ global String comment FEEDBACK = 1
@ global String comment SMOOTH_OPTION = 0
@ global String comment SWRAD_SCAT = 1.00
@ global String comment W_DAMPING = 0
@ global String comment DT = 48.00
@ global String comment ADAPT_DT_START = 48.00
@ global String comment ADAPT_DT_MAX = 96.00
@ global String comment ADAPT_DT_MIN = 36.00
@ global String comment RADT = 30.00
@ global String comment BLDT = 0.00
@ global String comment CUDT = 5.00
@ global String comment AER_OPT = 0
@ global String comment SWINT_OPT = 0
@ global String comment AER_TYPE = 1
@ global String comment AER_AOD550_OPT = 1
@ global String comment AER_ANGEXP_OPT = 1
@ global String comment AER_SSA_OPT = 1
@ global String comment AER_ASY_OPT = 1
@ global String comment AER_AOD550_VAL = 0.12
@ global String comment AER_ANGEXP_VAL = 1.30
@ global String comment AER_SSA_VAL = 0.00
@ global String comment AER_ASY_VAL = 0.00
@ global String comment MOIST_ADV_OPT = 1
@ global String comment SCALAR_ADV_OPT = 1
@ global String comment TKE_ADV_OPT = 1
@ global String comment DIFF_6TH_OPT = 0
@ global String comment DIFF_6TH_FACTOR = 0.12
@ global String comment OBS_NUDGE_OPT = 0
@ global String comment BUCKET_MM = -1.00
@ global String comment BUCKET_J = -1.00
@ global String comment PREC_ACC_DT = 0.00
@ global String comment SF_OCEAN_PHYSICS = 0
@ global String comment ISFTCFLX = 0
@ global String comment ISHALLOW = 0
@ global String comment ISFFLX = 1
@ global String comment ICLOUD = 1
@ global String comment ICLOUD_CU = 0
@ global String comment TRACER_PBLMIX = 1
@ global String comment SCALAR_PBLMIX = 0
@ global String comment YSU_TOPDOWN_PBLMIX = 0
@ global String comment GRAV_SETTLING = 0
@ global String comment DFI_OPT = 0
@ global String comment SIMULATION_INITIALIZATION_TYPE = REAL-DATA CASE
@ global String comment WEST-EAST_PATCH_START_UNSTAG = 1
@ global String comment WEST-EAST_PATCH_END_UNSTAG = 213
@ global String comment WEST-EAST_PATCH_START_STAG = 1
@ global String comment WEST-EAST_PATCH_END_STAG = 214
@ global String comment SOUTH-NORTH_PATCH_START_UNSTAG = 1
@ global String comment SOUTH-NORTH_PATCH_END_UNSTAG = 192
@ global String comment SOUTH-NORTH_PATCH_START_STAG = 1
@ global String comment SOUTH-NORTH_PATCH_END_STAG = 193
@ global String comment BOTTOM-TOP_PATCH_START_UNSTAG = 1
@ global String comment BOTTOM-TOP_PATCH_END_UNSTAG = 47
@ global String comment BOTTOM-TOP_PATCH_START_STAG = 1
@ global String comment BOTTOM-TOP_PATCH_END_STAG = 48
@ global String comment GRID_ID = 2
@ global String comment PARENT_ID = 1
@ global String comment I_PARENT_START = 136
@ global String comment J_PARENT_START = 73
@ global String comment PARENT_GRID_RATIO = 3
@ global String comment CEN_LAT = -5.02
@ global String comment CEN_LON = 34.90
@ global String comment TRUELAT1 = -0.50
@ global String comment TRUELAT2 = 0.00
@ global String comment MOAD_CEN_LAT = -0.50
@ global String comment STAND_LON = 20.00
@ global String comment POLE_LAT = 90.00
@ global String comment POLE_LON = 0.00
@ global String comment GMT = 0.00
@ global String comment JULYR = 2015
@ global String comment JULDAY = 60
@ global String comment MAP_PROJ = 1
@ global String comment MAP_PROJ_CHAR = Lambert Conformal
@ global String comment MMINLU = MODIFIED_IGBP_MODIS_NOAH
@ global String comment NUM_LAND_CAT = 21
@ global String comment ISWATER = 17
@ global String comment ISLAKE = 21
@ global String comment ISICE = 15
@ global String comment ISURBAN = 13
@ global String comment ISOILWATER = 14
_____________
Peter E. Tuju
Dar es Salaam
T A N Z A N I A
----------------------
On Wednesday, May 25, 2016 7:04 PM, "gradsusr-request at gradsusr.org<mailto:gradsusr-request at gradsusr.org>" <gradsusr-request at gradsusr.org<mailto:gradsusr-request at gradsusr.org>> wrote:
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Today's Topics:
1. Re: Entire Grid Undefined, Why? (Peter Tuju)
2. Re: Entire Grid Undefined, Why? (Peter Tuju)
3. Re: Entire Grid Undefined, Why? (J43)
4. Extract data from .ctl and .dat file (Usha Verma)
----------------------------------------------------------------------
Message: 1
Date: Tue, 24 May 2016 18:24:20 +0000 (UTC)
From: Peter Tuju <peterenos at ymail.com<mailto:peterenos at ymail.com>>
Subject: Re: [gradsusr] Entire Grid Undefined, Why?
To: <gradsusr at gradsusr.org<mailto:gradsusr at gradsusr.org>>, <gradsusr at gradsusr.org<mailto:gradsusr at gradsusr.org>>
Message-ID:
<768615027.1983589.1464114260467.JavaMail.yahoo at mail.yahoo.com<mailto:768615027.1983589.1464114260467.JavaMail.yahoo at mail.yahoo.com>>
Content-Type: text/plain; charset="utf-8"
blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px #715FFA solid !important; padding-left:1ex !important; background-color:white !important; } Dear all,?
I have to work with wrfout from seasonal model run to visualize the products. I successfully created a .ctl file to read in grads, but the problem Is that, I get ?"entire grid undefined " Why this and how to resolve it? For short time model run say 3 days works fine but for seasons I got stuck. Please help!?
'reinit''set display color white''open wrfout.ctl''set gxout shaded''d t2'
Entire Grid Undefined
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Message: 2
Date: Tue, 24 May 2016 18:24:20 +0000 (UTC)
From: Peter Tuju <peterenos at ymail.com<mailto:peterenos at ymail.com>>
Subject: Re: [gradsusr] Entire Grid Undefined, Why?
To: <gradsusr at gradsusr.org<mailto:gradsusr at gradsusr.org>>, <gradsusr at gradsusr.org<mailto:gradsusr at gradsusr.org>>
Message-ID:
<768615027.1983589.1464114260467.JavaMail.yahoo at mail.yahoo.com<mailto:768615027.1983589.1464114260467.JavaMail.yahoo at mail.yahoo.com>>
Content-Type: text/plain; charset="utf-8"
blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px #715FFA solid !important; padding-left:1ex !important; background-color:white !important; } Dear all,?
I have to work with wrfout from seasonal model run to visualize the products. I successfully created a .ctl file to read in grads, but the problem Is that, I get ?"entire grid undefined " Why this and how to resolve it? For short time model run say 3 days works fine but for seasons I got stuck. Please help!?
'reinit''set display color white''open wrfout.ctl''set gxout shaded''d t2'
Entire Grid Undefined
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Message: 3
Date: Tue, 24 May 2016 22:24:13 +0200
From: J43 <webmaster at meteorologic.net<mailto:webmaster at meteorologic.net>>
Subject: Re: [gradsusr] Entire Grid Undefined, Why?
To: GrADS Users Forum <gradsusr at gradsusr.org<mailto:gradsusr at gradsusr.org>>
Message-ID: <c2408947-b32c-f1fa-0f3e-7163c6cdbc60 at meteorologic.net<mailto:c2408947-b32c-f1fa-0f3e-7163c6cdbc60 at meteorologic.net>>
Content-Type: text/plain; charset=windows-1252; format=flowed
Hi,
Can you send the CTL file ? have you got use a sdfopen function in a wrf
netcdf output file ?
Le 24/05/2016 ? 20:24, Peter Tuju a ?crit :
> I have to work with wrfout from seasonal model run to visualize the
> products. I successfully created a .ctl file to read in grads, but the
> problem Is that, I get "entire grid undefined " Why this and how to
> resolve it? For short time model run say 3 days works fine but for
> seasons I got stuck. Please help!
------------------------------
Message: 4
Date: Wed, 25 May 2016 15:26:20 +0530
From: Usha Verma <loukayaverma at gmail.com<mailto:loukayaverma at gmail.com>>
Subject: [gradsusr] Extract data from .ctl and .dat file
To: gradsusr at gradsusr.org<mailto:gradsusr at gradsusr.org>
Message-ID:
<CANfef=vizED3thvcuZpdQhoL0KiPrmQ-UWttrd5PkPUXjOaNJw at mail.gmail.com<mailto:vizED3thvcuZpdQhoL0KiPrmQ-UWttrd5PkPUXjOaNJw at mail.gmail.com>>
Content-Type: text/plain; charset="utf-8"
Dear Users
>*I am using ARW post to create .ctl and .dat files for the GrADS.
*>*Now I want to extract some parameters from the .dat file for some particular
*>
*locations.**I am giving the .ctl file for your reference.dset ^dom3.dat
*>*options byteswapped
*>*undef 1.e30
*>*title OUTPUT FROM WRF V3.2.1 MODEL
*>*pdef 129 144 lcc 31.672 78.135 65.000 72.500 30.00000 10.00000
77.00000 9000.000
*>*9000.000
*>*xdef 331 linear 71.47070 0.04054054
*>*ydef 306 linear 25.33539 0.04054054
*>*zdef 19 levels
*>*1000.00000
*>*950.00000
*>*900.00000
*>*850.00000
*>*800.00000
*>*750.00000
*>*700.00000
*>*650.00000
*>*600.00000
*>*550.00000
*>*500.00000
*>*450.00000
*>*400.00000
*>*350.00000
*>*300.00000
*>*250.00000
*>*200.00000
*>*150.00000
*>*100.00000
*>*tdef 41 linear 00Z26OCT2010 180MN
*>*VARS 27
*>*LU_INDEX 1 0 LAND USE CATEGORY (-)
*>*U 19 0 x-wind component (m s-1)
*>*V 19 0 y-wind component (m s-1)
*>*W 19 0 z-wind component (m s-1)
*>*PH 19 0 perturbation geopotential (m2 s-2)
*>*PHB 19 0 base-state geopotential (m2 s-2)
*>*T 19 0 perturbation potential temperature (theta-t0) (K)
*>*MU 1 0 perturbation dry air mass in column (Pa)
*>*MUB 1 0 base state dry air mass in column (Pa)
*>*P 19 0 perturbation pressure (Pa)
*>*PB 19 0 BASE STATE PRESSURE (Pa)
*>*T2 1 0 TEMP at 2 M (K)
*>*TH2 1 0 POT TEMP at 2 M (K)
*>*PSFC 1 0 SFC PRESSURE (Pa)
*>*U10 1 0 U at 10 M (m s-1)
*>*V10 1 0 V at 10 M (m s-1)
*>*LANDMASK 1 0 LAND MASK (1 FOR LAND, 0 FOR WATER) (-)
*>*VEGFRA 1 0 VEGETATION FRACTION (-)
*>*SST 1 0 SEA SURFACE TEMPERATURE (K)
*>*HGT 1 0 Terrain Height (m)
*>*TSK 1 0 SURFACE SKIN TEMPERATURE (K)
*>*RAINC 1 0 ACCUMULATED TOTAL CUMULUS PRECIPITATION (mm)
*>*RAINNC 1 0 ACCUMULATED TOTAL GRID SCALE PRECIPITATION (mm)
*>*XLAT 1 0 LATITUDE, SOUTH IS NEGATIVE (degree_north)
*>*XLONG 1 0 LONGITUDE, WEST IS NEGATIVE (degree_east)
*>*TMN 1 0 SOIL TEMPERATURE AT LOWER BOUNDARY (K)
*>*PBLH 1 0 PBL HEIGHT (m)
*>
*ENDVARS*
*I am new in this field please suggest me how can i extract my data
from this file*
*Regards*
*Usha*
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Jennifer Miletta Adams
Center for Ocean-Land-Atmosphere Studies (COLA)
George Mason University
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