[gradsusr] A "sh: line 1: 2386 Abort trap: 6" termination process using Bundle opengrads 2.2.1 in Macos

Eduardo Agosta Scarel eduardo.agosta at gmail.com
Mon Apr 22 05:59:03 EDT 2019


Hi Arlindo, here am I again.
I have untarred the zip file directly in my home, and ran the ./opengrads
from there, and I have the same error massage.
---------

MacBook-Pro-de-Eduardo:~ eduardoagostascarel$ cd
opengrads-2.2.1.oga.1/Contents

MacBook-Pro-de-Eduardo:Contents eduardoagostascarel$ ./opengrads


              Welcome to the OpenGrADS Bundle Distribution

              --------------------------------------------


For additional information enter "opengrads --manual".


Starting "(/usr/bin/env
DYLD_LIBRARY_PATH=/Users/eduardoagostascarel/opengrads-2.2.1.oga.1/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex:
/Users/eduardoagostascarel/opengrads-2.2.1.oga.1/Contents/Darwin/Versions/2.2.1.oga.1/i386/grads
-HC 1 ) " ...



Grid Analysis and Display System (GrADS) Version 2.2.1.oga.1

Copyright (C) 1988-2018 by George Mason University

GrADS comes with ABSOLUTELY NO WARRANTY

See file COPYRIGHT for more information


Config: v2.2.1.oga.1 little-endian readline grib2 netcdf hdf4-sds hdf5
opendap-grids,stn athena geotiff shapefile

Issue 'q config' and 'q gxconfig' commands for more detailed configuration
information

Loading User Defined Extensions table
</Users/eduardoagostascarel/opengrads-2.2.1.oga.1/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex/udxt>
... ok.

Landscape mode? ('n' for portrait):

GX Package Initialization: Size = 11 8.5

Command line history in /Users/eduardoagostascarel/.grads.log

ga-> sdfopen /Volumes/Seagate/Datos/Miscelanea/uwnd.mon.anomaly.nc

Scanning self-describing file:  /Volumes/Seagate/Datos/Miscelanea/
uwnd.mon.anomaly.nc

SDF file /Volumes/Seagate/Datos/Miscelanea/uwnd.mon.anomaly.nc is open as
file 1

LON set to 0 360

LAT set to -90 90

LEV set to 1000 1000

Time values set: 1958:1:1:0 1958:1:1:0

E set to 1 1

ga-> sdfopen /Volumes/Seagate/Datos/Miscelanea/vwnd.mon.anomaly.nc

Scanning self-describing file:  /Volumes/Seagate/Datos/Miscelanea/
vwnd.mon.anomaly.nc

SDF file /Volumes/Seagate/Datos/Miscelanea/vwnd.mon.anomaly.nc is open as
file 2

ga-> set t 300

Time values set: 1982:12:1:0 1982:12:1:0

ga-> d uwnda

Contouring: -6 to 8 interval 1

ga-> d vwnda.2

Contouring: -4 to 5 interval 1

ga-> define chi=fish_chi(uwdna,vwnda.2)

sh: line 1:  1092 Abort trap: 6           ( /usr/bin/env
DYLD_LIBRARY_PATH=/Users/eduardoagostascarel/opengrads-2.2.1.oga.1/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex:
/Users/eduardoagostascarel/opengrads-2.2.1.oga.1/Contents/Darwin/Versions/2.2.1.oga.1/i386/grads
-HC 1 )

MacBook-Pro-de-Eduardo:Contents eduardoagostascarel$
---------

Edu.

El lun., 22 abr. 2019 a las 11:51, Eduardo Agosta Scarel (<
eduardo.agosta at gmail.com>) escribió:

> Hi Arlindo.
> Yes, I have installed the opengrads bundle file in my folder /opt/opengrads
> Now I have run the ./opengrads directly from the folder and have the same
> error message, as you can see pasted below.
> Edu.
>
>
> MacBook-Pro-de-Eduardo:~ eduardoagostascarel$
> /opt/opengrads/Contents/opengrads ; exit;
>
>
>               Welcome to the OpenGrADS Bundle Distribution
>
>               --------------------------------------------
>
>
> For additional information enter "opengrads --manual".
>
>
> Starting "(/usr/bin/env
> DYLD_LIBRARY_PATH=/opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex:
> /opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/grads -HC 1 ) " ...
>
>
>
> Grid Analysis and Display System (GrADS) Version 2.2.1.oga.1
>
> Copyright (C) 1988-2018 by George Mason University
>
> GrADS comes with ABSOLUTELY NO WARRANTY
>
> See file COPYRIGHT for more information
>
>
> Config: v2.2.1.oga.1 little-endian readline grib2 netcdf hdf4-sds hdf5
> opendap-grids,stn athena geotiff shapefile
>
> Issue 'q config' and 'q gxconfig' commands for more detailed configuration
> information
>
> Loading User Defined Extensions table
> </opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex/udxt> ... ok.
>
> Landscape mode? ('n' for portrait):
>
> GX Package Initialization: Size = 11 8.5
>
> Command line history in /Users/eduardoagostascarel/.grads.log
>
> ga-> sdfopen /Volumes/Seagate/Datos/Miscelanea/uwnd.mon.anomaly.nc
>
> Scanning self-describing file:  /Volumes/Seagate/Datos/Miscelanea/
> uwnd.mon.anomaly.nc
>
> SDF file /Volumes/Seagate/Datos/Miscelanea/uwnd.mon.anomaly.nc is open as
> file 1
>
> LON set to 0 360
>
> LAT set to -90 90
>
> LEV set to 1000 1000
>
> Time values set: 1958:1:1:0 1958:1:1:0
>
> E set to 1 1
>
> ga-> sdfopen /Volumes/Seagate/Datos/Miscelanea/vwnd.mon.anomaly.nc
>
> Scanning self-describing file:  /Volumes/Seagate/Datos/Miscelanea/
> vwnd.mon.anomaly.nc
>
> SDF file /Volumes/Seagate/Datos/Miscelanea/vwnd.mon.anomaly.nc is open as
> file 2
>
> ga-> set t 100
>
> Time values set: 1966:4:1:0 1966:4:1:0
>
> ga-> d uwnda
>
> Contouring: -8 to 6 interval 2
>
> ga-> d vwnda.2
>
> Contouring: -7 to 7 interval 1
>
> ga-> define chi=fish_chi(uwnda,vwdna.2)
>
> sh: line 1:  1014 Abort trap: 6           ( /usr/bin/env
> DYLD_LIBRARY_PATH=/opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex:
> /opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/grads -HC 1 )
>
> logout
>
> Saving session...
>
> ...copying shared history...
>
> ...saving history...truncating history files...
>
> ...completed.
>
>
> [Proceso completado]
>
>
>
>
> El lun., 22 abr. 2019 a las 6:07, Arlindo da Silva (<dasilva at alum.mit.edu>)
> escribió:
>
>> Eduardo,
>>
>>    Are you sure that you are running what you have downloaded? Go to a
>> temporary directory,
>>
>> % tar xvfz /path/to/bundletarball.tgz
>> % cd opengrads-2.2.1/Contents
>> % ./opengrads
>>
>> Arlindo
>>
>>
>> On Thu, Apr 18, 2019 at 3:40 AM Eduardo Agosta Scarel <
>> eduardo.agosta at gmail.com> wrote:
>>
>>> Hi Arlindo.
>>> I downloaded your bundle file from the link provided, and installed
>>> Grads in my Mac book-pro.
>>> Unfortunately it sill produces the same error massage that I copy here
>>> below.
>>> Thanks for your help.
>>> Eduardo.
>>>
>>> For additional information enter "grads --manual".
>>>
>>>
>>> Starting "(/usr/bin/env
>>> DYLD_LIBRARY_PATH=/opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex:
>>> /opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/grads  ) " ...
>>>
>>>
>>>
>>> Grid Analysis and Display System (GrADS) Version 2.2.1.oga.1
>>>
>>> Copyright (C) 1988-2018 by George Mason University
>>>
>>> GrADS comes with ABSOLUTELY NO WARRANTY
>>>
>>> See file COPYRIGHT for more information
>>>
>>>
>>> Config: v2.2.1.oga.1 little-endian readline grib2 netcdf hdf4-sds hdf5
>>> opendap-grids,stn athena geotiff shapefile
>>>
>>> Issue 'q config' and 'q gxconfig' commands for more detailed
>>> configuration information
>>>
>>> Loading User Defined Extensions table
>>> </opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex/udxt> ... ok.
>>>
>>> Landscape mode? ('n' for portrait):
>>>
>>> GX Package Initialization: Size = 11 8.5
>>>
>>> ga-> sdfopen /Volumes/Seagate/Datos/Miscelanea/uwnd.mon.anomaly.nc
>>>
>>> Scanning self-describing file:  /Volumes/Seagate/Datos/Miscelanea/
>>> uwnd.mon.anomaly.nc
>>>
>>> SDF file /Volumes/Seagate/Datos/Miscelanea/uwnd.mon.anomaly.nc is open
>>> as file 1
>>>
>>> LON set to 0 360
>>>
>>> LAT set to -90 90
>>>
>>> LEV set to 1000 1000
>>>
>>> Time values set: 1958:1:1:0 1958:1:1:0
>>>
>>> E set to 1 1
>>>
>>> ga-> sdfopen /Volumes/Seagate/Datos/Miscelanea/vwnd.mon.anomaly.nc
>>>
>>> Scanning self-describing file:  /Volumes/Seagate/Datos/Miscelanea/
>>> vwnd.mon.anomaly.nc
>>>
>>> SDF file /Volumes/Seagate/Datos/Miscelanea/vwnd.mon.anomaly.nc is open
>>> as file 2
>>>
>>> ga-> set t 100
>>>
>>> Time values set: 1966:4:1:0 1966:4:1:0
>>>
>>> ga-> d uwnda
>>>
>>> Contouring: -8 to 6 interval 2
>>>
>>> ga-> d vwnda.2
>>>
>>> Contouring: -7 to 7 interval 1
>>>
>>> ga-> define chi=fish_chi(uwnda,vwnda.2)
>>>
>>> sh: line 1:   604 Abort trap: 6           ( /usr/bin/env
>>> DYLD_LIBRARY_PATH=/opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/gex:
>>> /opt/opengrads/Contents/Darwin/Versions/2.2.1.oga.1/i386/grads )
>>>
>>> logout
>>>
>>> Saving session...
>>>
>>> ...copying shared history...
>>>
>>> ...saving history...truncating history files...
>>>
>>> ...completed.
>>>
>>>
>>> [Proceso completado]
>>>
>>>
>>> El lun., 15 abr. 2019 a las 13:44, Eduardo Agosta Scarel (<
>>> eduardo.agosta at gmail.com>) escribió:
>>>
>>>> Certainly, Arlindo.
>>>> I will try it today and will keep you informed.
>>>> Edu.
>>>>
>>>> Descarga Outlook para iOS <https://aka.ms/o0ukef>
>>>>
>>>> ------------------------------
>>>> *De:* gradsusr <gradsusr-bounces at gradsusr.org> en nombre de Arlindo da
>>>> Silva <dasilva at alum.mit.edu>
>>>> *Enviado:* lunes, abril 15, 2019 1:54 a. m.
>>>> *Para:* GrADS Users Forum
>>>> *Asunto:* Re: [gradsusr] A "sh: line 1: 2386 Abort trap: 6"
>>>> termination process using Bundle opengrads 2.2.1 in Macos
>>>>
>>>> Dear Eduardo,
>>>>
>>>> I was finally able to reproduce your problem. I have no problem on my
>>>> Mojave laptop, but found a mac pro which showed exactly what you report.  I
>>>> have a new build that seems to solve the problem, but I need beta testers
>>>> before I upload this to sf.net. Can you and others running Mojave try
>>>> this build?
>>>>
>>>>
>>>> https://www.dropbox.com/s/slahg2lu4kx49ro/opengrads-2.2.1.oga.1-bundle-x86_64-apple-darwin18.5.0.tar.gz?dl=1
>>>>
>>>> (This is the standard bundle tarball, I'll create a pkg once I confirm
>>>> this works.)  Please post your results to this list, do not email me
>>>> directly.
>>>>
>>>>    Thanks,
>>>>
>>>>       Arlindo
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Wed, Mar 27, 2019 at 5:15 AM Eduardo Agosta Scarel <
>>>> eduardo.agosta at gmail.com> wrote:
>>>>
>>>>> Dear Grads Users
>>>>> I am facing the problem while trying to use fish-based functions under
>>>>> the Opengrads 2.2.1 bundle version for Macos.
>>>>> Below you will see the error message. Have you any suggestions how to
>>>>> solve it?
>>>>> Thanks.
>>>>>
>>>>> ga-> q file
>>>>>
>>>>> File 1 :
>>>>>
>>>>>   Descriptor: /Volumes/Seagate/Datos/ERA_interim/Diario/12UTC/
>>>>> u.v.300_79-18.nc
>>>>>
>>>>>   Binary: /Volumes/Seagate/Datos/ERA_interim/Diario/12UTC/
>>>>> u.v.300_79-18.nc
>>>>>
>>>>>   Type = Gridded
>>>>>
>>>>>   Xsize = 480  Ysize = 241  Zsize = 1  Tsize = 14610  Esize = 1
>>>>>
>>>>>   Number of Variables = 2
>>>>>
>>>>>      u  0  t,y,x  U component of wind
>>>>>
>>>>>      v  0  t,y,x  V component of wind
>>>>>
>>>>> ga-> y=fish_psi(u,v)
>>>>>
>>>>> sh: line 1:  2386 Abort trap: 6           ( /usr/bin/env
>>>>> DYLD_LIBRARY_PATH=/Applications/OpenGrADS/Darwin/Versions/2.2.1.oga.1/i386/gex:
>>>>> /Applications/OpenGrADS/Darwin/Versions/2.2.1.oga.1/i386/grads -HC 1 )
>>>>>
>>>>> MacBook-Pro-de-Eduardo:~ eduardoagostascarel$
>>>>> --
>>>>> Eduardo Agosta Scarel
>>>>> www.linkedin.com/in/eduardo-agosta-scarel
>>>>>
>>>>> "The Carmelite NGO is a way to promote justice, peace and care for
>>>>> creation"
>>>>> "La ONG Carmelita es una manera de promover la justicia, la paz y el
>>>>> cuidado de la creación"
>>>>> *http://carmelitengo.org/ <http://carmelitengo.org/>*
>>>>> Promote Laudato Si' - Promueve Laudato Si´
>>>>> https://www.laudato-si-for-all.com/
>>>>>
>>>>> _______________________________________________
>>>>> gradsusr mailing list
>>>>> gradsusr at gradsusr.org
>>>>> http://gradsusr.org/mailman/listinfo/gradsusr
>>>>>
>>>>
>>>>
>>>> --
>>>> Arlindo da Silva
>>>> *dasilva at alum.mit.edu <dasilva at alum.mit.edu>*
>>>>
>>>
>>>
>>> --
>>> Eduardo Agosta Scarel
>>> www.linkedin.com/in/eduardo-agosta-scarel
>>>
>>> "The Carmelite NGO is a way to promote justice, peace and care for
>>> creation"
>>> "La ONG Carmelita es una manera de promover la justicia, la paz y el
>>> cuidado de la creación"
>>> *http://carmelitengo.org/ <http://carmelitengo.org/>*
>>> Promote Laudato Si' - Promueve Laudato Si´
>>> https://www.laudato-si-for-all.com/
>>>
>>> _______________________________________________
>>> gradsusr mailing list
>>> gradsusr at gradsusr.org
>>> http://gradsusr.org/mailman/listinfo/gradsusr
>>>
>> --
>> Arlindo da Silva
>> *dasilva at alum.mit.edu <dasilva at alum.mit.edu>*
>> _______________________________________________
>> gradsusr mailing list
>> gradsusr at gradsusr.org
>> http://gradsusr.org/mailman/listinfo/gradsusr
>>
>
>
> --
> Eduardo Agosta Scarel
> www.linkedin.com/in/eduardo-agosta-scarel
>
> "The Carmelite NGO is a way to promote justice, peace and care for
> creation"
> "La ONG Carmelita es una manera de promover la justicia, la paz y el
> cuidado de la creación"
> *http://carmelitengo.org/ <http://carmelitengo.org/>*
> Promote Laudato Si' - Promueve Laudato Si´
> https://www.laudato-si-for-all.com/
>
>

-- 
Eduardo Agosta Scarel
www.linkedin.com/in/eduardo-agosta-scarel

"The Carmelite NGO is a way to promote justice, peace and care for creation"
"La ONG Carmelita es una manera de promover la justicia, la paz y el
cuidado de la creación"
*http://carmelitengo.org/ <http://carmelitengo.org/>*
Promote Laudato Si' - Promueve Laudato Si´
https://www.laudato-si-for-all.com/
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