[gradsusr] Control File Issues for HDF5 file

[Justin Hicks]

Grads Users,

I was able to open the control file in grads, but i get an error when I try
to display a variable:

ga-> d plrate
HDF5-DIAG: Error detected in HDF5 (1.8.7) thread 0:
  #000: H5D.c line 341 in H5Dopen2(): not a dataset
    major: Dataset
    minor: Inappropriate type
Error: H5Dopen2 failed for variable /Grids/G1/precipLiqRate
Error: Variable /Grids/G1/precipLiqRate not in HDF5 file
Data Request Error:  Error for variable 'plrate'
  Error ocurred at column 1
DISPLAY error:  Invalid expression
  Expression = plrate

The control file is below:

DSET
/data2/GPM/GPM_3CMB.03/2015/3B-MO.GPM.DPRGMI.CORRAGM.20150301-S000000-E235959.03.V03D.HDF5
OPTIONS template
DTYPE hdf5_grid
TITLE GPM precip
UNDEF -999.0
XDEF 3600 linear -180 0.1
YDEF 300 linear -20 0.1
ZDEF 1 levels 1000
TDEF 1 linear 01mar2015 1dy
VARS 4
/Grids/G1/precipLiqRate=>plrate            0 x,y  liquid precipitation rate
/Grids/G1/precipLiqWaterContent=>plcon     0 x,y   liquid precipitation
content
/Grids/G1/precipTotDm=>ptot                0 x,y   precipitation total
/Grids/G1/precipTotRate=>ptotr             0 x,y  precipitation total rate
ENDVARS


I don't think the xdef and ydef are completely accurate, but I shouldn't
get that error message even if the edef and ydef are wrong. The file
contents of h5dump are below:

/home/jhicks/h5dump -n
3B-MO.GPM.DPRGMI.CORRAGM.20150301-S000000-E235959.03.V03D.HDF5
HDF5 "3B-MO.GPM.DPRGMI.CORRAGM.20150301-S000000-E235959.03.V03D.HDF5" {
FILE_CONTENTS {
 group      /
 group      /Grids
 group      /Grids/G1
 dataset    /Grids/G1/precipAllObs
 group      /Grids/G1/precipLiqRate
 dataset    /Grids/G1/precipLiqRate/count
 dataset    /Grids/G1/precipLiqRate/hist
 dataset    /Grids/G1/precipLiqRate/mean
 dataset    /Grids/G1/precipLiqRate/stdev
 group      /Grids/G1/precipLiqWaterContent
 dataset    /Grids/G1/precipLiqWaterContent/count
 dataset    /Grids/G1/precipLiqWaterContent/hist
 dataset    /Grids/G1/precipLiqWaterContent/mean
 dataset    /Grids/G1/precipLiqWaterContent/stdev
 group      /Grids/G1/precipTotDm
 dataset    /Grids/G1/precipTotDm/count
 dataset    /Grids/G1/precipTotDm/hist
 dataset    /Grids/G1/precipTotDm/mean
 dataset    /Grids/G1/precipTotDm/stdev
 group      /Grids/G1/precipTotLogNw
 dataset    /Grids/G1/precipTotLogNw/count
 dataset    /Grids/G1/precipTotLogNw/hist
 dataset    /Grids/G1/precipTotLogNw/mean
 dataset    /Grids/G1/precipTotLogNw/stdev
 group      /Grids/G1/precipTotRate
 dataset    /Grids/G1/precipTotRate/count
 dataset    /Grids/G1/precipTotRate/hist
 dataset    /Grids/G1/precipTotRate/mean
 dataset    /Grids/G1/precipTotRate/stdev
 group      /Grids/G1/precipTotWaterContent
 dataset    /Grids/G1/precipTotWaterContent/count
 dataset    /Grids/G1/precipTotWaterContent/hist
 dataset    /Grids/G1/precipTotWaterContent/mean
 dataset    /Grids/G1/precipTotWaterContent/stdev
 dataset    /Grids/G1/surfPrecipLiqRateProb
 dataset    /Grids/G1/surfPrecipLiqRateUn
 group      /Grids/G1/surfPrecipTotRateDiurnal
 dataset    /Grids/G1/surfPrecipTotRateDiurnal/count
 dataset    /Grids/G1/surfPrecipTotRateDiurnal/mean
 dataset    /Grids/G1/surfPrecipTotRateDiurnal/stdev
 dataset    /Grids/G1/surfPrecipTotRateDiurnalAllObs
 dataset    /Grids/G1/surfPrecipTotRateProb
 dataset    /Grids/G1/surfPrecipTotRateUn
 group      /Grids/G2
 dataset    /Grids/G2/precipAllObs
 group      /Grids/G2/precipLiqRate
 dataset    /Grids/G2/precipLiqRate/count
 dataset    /Grids/G2/precipLiqRate/mean
 dataset    /Grids/G2/precipLiqRate/stdev
 group      /Grids/G2/precipLiqWaterContent
 dataset    /Grids/G2/precipLiqWaterContent/count
 dataset    /Grids/G2/precipLiqWaterContent/mean
 dataset    /Grids/G2/precipLiqWaterContent/stdev
 group      /Grids/G2/precipTotDm
 dataset    /Grids/G2/precipTotDm/count
 dataset    /Grids/G2/precipTotDm/mean
 dataset    /Grids/G2/precipTotDm/stdev
 group      /Grids/G2/precipTotLogNw
 dataset    /Grids/G2/precipTotLogNw/count
 dataset    /Grids/G2/precipTotLogNw/mean
 dataset    /Grids/G2/precipTotLogNw/stdev
 group      /Grids/G2/precipTotRate
 dataset    /Grids/G2/precipTotRate/count
 dataset    /Grids/G2/precipTotRate/mean
 dataset    /Grids/G2/precipTotRate/stdev
 group      /Grids/G2/precipTotWaterContent
 dataset    /Grids/G2/precipTotWaterContent/count
 dataset    /Grids/G2/precipTotWaterContent/mean
 dataset    /Grids/G2/precipTotWaterContent/stdev
 dataset    /Grids/G2/surfPrecipLiqRateProb
 dataset    /Grids/G2/surfPrecipLiqRateUn
 group      /Grids/G2/surfPrecipTotRateDiurnal
 dataset    /Grids/G2/surfPrecipTotRateDiurnal/count
 dataset    /Grids/G2/surfPrecipTotRateDiurnal/mean
 dataset    /Grids/G2/surfPrecipTotRateDiurnal/stdev
 dataset    /Grids/G2/surfPrecipTotRateDiurnalAllObs
 dataset    /Grids/G2/surfPrecipTotRateProb
 dataset    /Grids/G2/surfPrecipTotRateUn
 dataset    /InputAlgorithmVersions
 dataset    /InputFileNames
 dataset    /InputGenerationDateTimes
 }
}


The group contents of /Grids/G1/precipLiqRate are below:

h5dump -H -g/Grids/G1/precipLiqRate
3B-MO.GPM.DPRGMI.CORRAGM.20150301-S000000-E235959.03.V03D.HDF5
HDF5 "3B-MO.GPM.DPRGMI.CORRAGM.20150301-S000000-E235959.03.V03D.HDF5" {
GROUP "/Grids/G1/precipLiqRate" {
   DATASET "count" {
      DATATYPE  H5T_STD_I32LE
      DATASPACE  SIMPLE { ( 3, 3, 16, 2, 72, 28 ) / ( 3, 3, 16, 2, 72, 28 )
}
      ATTRIBUTE "CodeMissingValue" {
         DATATYPE  H5T_STRING {
               STRSIZE 101;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
      ATTRIBUTE "DimensionNames" {
         DATATYPE  H5T_STRING {
               STRSIZE 21;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
   }
   DATASET "hist" {
      DATATYPE  H5T_STD_I32LE
      DATASPACE  SIMPLE { ( 30, 3, 3, 16, 2, 72, 28 ) / ( 30, 3, 3, 16, 2,
72, 28 ) }
      ATTRIBUTE "CodeMissingValue" {
         DATATYPE  H5T_STRING {
               STRSIZE 101;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
      ATTRIBUTE "DimensionNames" {
         DATATYPE  H5T_STRING {
               STRSIZE 25;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
   }
   DATASET "mean" {
      DATATYPE  H5T_IEEE_F32LE
      DATASPACE  SIMPLE { ( 3, 3, 16, 2, 72, 28 ) / ( 3, 3, 16, 2, 72, 28 )
}
      ATTRIBUTE "CodeMissingValue" {
         DATATYPE  H5T_STRING {
               STRSIZE 101;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
      ATTRIBUTE "DimensionNames" {
         DATATYPE  H5T_STRING {
               STRSIZE 21;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
   }
   DATASET "stdev" {
      DATATYPE  H5T_IEEE_F32LE
      DATASPACE  SIMPLE { ( 3, 3, 16, 2, 72, 28 ) / ( 3, 3, 16, 2, 72, 28 )
}
      ATTRIBUTE "CodeMissingValue" {
         DATATYPE  H5T_STRING {
               STRSIZE 101;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
      ATTRIBUTE "DimensionNames" {
         DATATYPE  H5T_STRING {
               STRSIZE 21;
               STRPAD H5T_STR_NULLTERM;
               CSET H5T_CSET_ASCII;
               CTYPE H5T_C_S1;
            }
         DATASPACE  SCALAR
      }
   }
}
}


Any help would be appreciated.

Thanks,

-Justin
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