[gradsusr] Errors installing readline and ncurses
David Stanfel
dstanfel at ualberta.ca
Wed Jun 18 13:30:39 EDT 2014
Thanks a bunch,
I got it to read into the udunits file but I got the following problem:
ga-> sdfopen
/Users/ninjawarrior343/University/Research_Job/atmos_month.nc.0000
Scanning self-describing file:
/Users/ninjawarrior343/University/Research_Job/atmos_month.nc.0000
SDF Error: 365 day calendars are no longer supported by sdfopen.
To open this file with GrADS, use a descriptor file with
a complete TDEF entry and OPTIONS 365_day_calendar.
Documentation is at http://iges.org/grads/gadoc/SDFdescriptorfile.html
I went to the documentation at the suggested site but I still don't really
understand what I have to do.
Thanks,
David
On Mon, Jun 16, 2014 at 9:04 PM, Hoop <hoop at colorado.edu> wrote:
> David Stanfel,
>
> GADDIR should be an absolute path.
>
> -Hoop
>
> On 06/16/2014 08:28 PM, gradsusr-request at gradsusr.org wrote:
> > Send gradsusr mailing list submissions to
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> > Today's Topics:
> >
> > 1. Re: Errors installing readline and ncurses supplies
> > (David Stanfel)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Mon, 16 Jun 2014 20:28:55 -0600
> > From: David Stanfel <dstanfel at ualberta.ca>
> > Subject: Re: [gradsusr] Errors installing readline and ncurses
> > supplies
> > To: GrADS Users Forum <gradsusr at gradsusr.org>
> > Message-ID:
> > <
> CADML8btfB6OfPeOT7-0iTvZ+9nGxzMkjxRNFBE5mfWtsrsgYNg at mail.gmail.com>
> > Content-Type: text/plain; charset="utf-8"
> >
> > I downloaded and unpacked the files and changed the GADDIR directory. I
> > still can't open the .nc file though. Here is the command line (in
> GrADS):
> >
> > ga-> sdfopen ocean_topaz_wc_btm.nc.0000
> >
> > Scanning self-describing file: ocean_topaz_wc_btm.nc.0000
> >
> > udunits(3): Couldn't open units database
> > "University/Research_job/supplibs/udunits.dat": No such file or directory
> >
> > gadsdf: UDUNITS package initialization failure.
> >
> > ga-> quit
> >
> > GX Package Terminated
> >
> > dstanfel:bin ninjawarrior343$ cd
> >
> > dstanfel:~ ninjawarrior343$ cd University/Research_job/supplibs/
> >
> > dstanfel:supplibs ninjawarrior343$ ls
> >
> > font0.dat font3.dat hires tables
> >
> > font1.dat font4.dat lowres tarfiles
> >
> > font2.dat font5.dat mres udunits.dat
> >
> >
> > You can see that udunits.dat is in the specified path. Where did I go
> wrong?
> >
> >
> > Thanks,
> >
> >
> > David
> >
> >
> > On Mon, Jun 16, 2014 at 4:24 PM, Jennifer Adams <jma at cola.iges.org>
> wrote:
> >
> >> Take a look at the Downloads web page (
> >> http://www.iges.org/grads/downloads.html) -- scroll down to the part
> >> about "Supplementary Files" . The udunits file GrADS is looking for is
> in
> >> data2.tar.gz.
> >> --Jennifer
> >>
> >>
> >>
> >> On Jun 16, 2014, at 4:47 PM, David Stanfel wrote:
> >>
> >> Thanks for the reply,
> >>
> >> I downloaded that and tried to open a netcdf file (.nc) and got the
> >> following result:
> >>
> >> ga-> sdfopen atmos_4xdaily_instant.nc
> >> Scanning self-describing file: atmos_4xdaily_instant.nc
> >> udunits(3): Couldn't open units database
> >> "/usr/local/lib/grads/udunits.dat": No such file or directory
> >> gadsdf: UDUNITS package initialization failure.
> >>
> >> How do I install the udunits package?
> >>
> >> Thanks,
> >>
> >> David
> >>
> >>
> >> On Mon, Jun 16, 2014 at 2:26 PM, Jennifer Adams <jma at cola.iges.org>
> wrote:
> >>
> >>> Please try the pre-compiled binaries instead of building from source?
> the
> >>> 10.7 build should work fine on Mavericks:
> >>> ftp://cola.gmu.edu/grads/2.1/grads-2.1.a2-bin-darwin11.4.tar.gz
> >>>
> >>> -Jennifer
> >>>
> >>> On Jun 16, 2014, at 4:07 PM, David Stanfel wrote:
> >>>
> >>> Hello,
> >>>
> >>> I am new to GrADS and to the Unix language. I run Mac OS X Mavericks.
> >>> When I tried to install the readline supplib I got the following error:
> >>>
> >>> mv tilde.o tilde.so
> >>> rm -f compat.so
> >>> gcc -c -DHAVE_CONFIG_H -I. -I.. -I.. -DRL_LIBRARY_VERSION='"5.0"' -g
> -O
> >>> -fno-common -o compat.o ../compat.c
> >>> mv compat.o compat.so
> >>> rm -f libreadline.5.0.dylib
> >>> gcc -dynamic -arch_only `/usr/bin/arch` -install_name
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.5.0.dylib
> >>> -current_version 5.0 -compatibility_version 5 -v -o
> libreadline.5.0.dylib
> >>> readline.so vi_mode.so funmap.so keymaps.so parens.so search.so
> rltty.so
> >>> complete.so bind.so isearch.so display.so signals.so util.so kill.so
> >>> undo.so macro.so input.so callback.so terminal.so text.so nls.so
> misc.so
> >>> xmalloc.so history.so histexpand.so histfile.so histsearch.so shell.so
> >>> mbutil.so tilde.so compat.so -lncurses
> >>> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
> >>> Target: x86_64-apple-darwin13.1.0
> >>> Thread model: posix
> >>> clang: error: invalid argument '-compatibility_version 5' only allowed
> >>> with '-dynamiclib'
> >>> make[1]: *** [libreadline.5.0.dylib] Error 1
> >>> make: [shared] Error 2 (ignored)
> >>> /bin/sh ./support/mkinstalldirs
> >>> /Users/ninjawarrior343/supplibs/src/readline/include \
> >>> /Users/ninjawarrior343/supplibs/src/readline/include/readline
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib \
> >>> /Users/ninjawarrior343/supplibs/src/readline/info
> >>> /Users/ninjawarrior343/supplibs/src/readline/man/man3
> >>> mkdir -p -- /Users/ninjawarrior343/supplibs/src/readline/include
> >>> /Users/ninjawarrior343/supplibs/src/readline/include/readline
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib
> >>> /Users/ninjawarrior343/supplibs/src/readline/info
> >>> /Users/ninjawarrior343/supplibs/src/readline/man/man3
> >>> for f in readline.h chardefs.h keymaps.h history.h tilde.h rlstdc.h
> >>> rlconf.h rltypedefs.h; do \
> >>> /usr/bin/install -c -m 644 ./$f
> >>> /Users/ninjawarrior343/supplibs/src/readline/include/readline ; \
> >>> done
> >>> ( if test -d doc ; then \
> >>> cd doc && \
> >>> /Applications/Xcode.app/Contents/Developer/usr/bin/make
> >>> infodir=/Users/ninjawarrior343/supplibs/src/readline/info DESTDIR=
> install;
> >>> \
> >>> fi )
> >>> /bin/sh ../support/mkdirs
> >>> /Users/ninjawarrior343/supplibs/src/readline/info
> >>> /Users/ninjawarrior343/supplibs/src/readline/man/man3
> >>> if test -n "" ; then \
> >>> /bin/sh ../support/mkdirs ; \
> >>> fi
> >>> if test -f readline.info; then \
> >>> /usr/bin/install -c -m 644 readline.info
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/readline.info; \
> >>> else \
> >>> /usr/bin/install -c -m 644 ./readline.info
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/readline.info; \
> >>> fi
> >>> if test -f rluserman.info; then \
> >>> /usr/bin/install -c -m 644 rluserman.info
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/rluserman.info; \
> >>> else \
> >>> /usr/bin/install -c -m 644 ./rluserman.info
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/rluserman.info; \
> >>> fi
> >>> if test -f history.info; then \
> >>> /usr/bin/install -c -m 644 history.info
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/history.info; \
> >>> else \
> >>> /usr/bin/install -c -m 644 ./history.info
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/history.info; \
> >>> fi
> >>> if /bin/sh -c 'install-info --version' >/dev/null 2>&1; then \
> >>> install-info
> >>> --dir-file=/Users/ninjawarrior343/supplibs/src/readline/info/dir \
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/readline.info ; \
> >>> install-info
> >>> --dir-file=/Users/ninjawarrior343/supplibs/src/readline/info/dir \
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/history.info ; \
> >>> install-info
> >>> --dir-file=/Users/ninjawarrior343/supplibs/src/readline/info/dir \
> >>> /Users/ninjawarrior343/supplibs/src/readline/info/rluserman.info ; \
> >>> else true; fi
> >>> /usr/bin/install -c -m 644 ./readline.3
> >>> /Users/ninjawarrior343/supplibs/src/readline/man/man3/readline.3
> >>> /usr/bin/install -c -m 644 ./history.3
> >>> /Users/ninjawarrior343/supplibs/src/readline/man/man3/history.3
> >>> if test -n "" ; then \
> >>> if test -f readline.html; then \
> >>> /usr/bin/install -c -m 644 readline.html /readline.html; \
> >>> else \
> >>> /usr/bin/install -c -m 644 ./readline.html /readline.html; \
> >>> fi ; \
> >>> if test -f history.html; then \
> >>> /usr/bin/install -c -m 644 history.html /history.html; \
> >>> else \
> >>> /usr/bin/install -c -m 644 ./history.html /history.html; \
> >>> fi ; \
> >>> if test -f rluserman.html; then \
> >>> /usr/bin/install -c -m 644 rluserman.html /rluserman.html; \
> >>> else \
> >>> /usr/bin/install -c -m 644 ./rluserman.html /rluserman.html; \
> >>> fi ; \
> >>> fi
> >>> mv /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.old
> >>> mv: rename
> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
> >>> to /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.old: No
> >>> such file or directory
> >>> make: [install-static] Error 1 (ignored)
> >>> /usr/bin/install -c -m 644 libreadline.a
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
> >>> test -n "ranlib" && ranlib
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
> >>> mv /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.old
> >>> mv: rename
> /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
> >>> to /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.old: No
> such
> >>> file or directory
> >>> make: [install-static] Error 1 (ignored)
> >>> /usr/bin/install -c -m 644 libhistory.a
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
> >>> test -n "ranlib" && ranlib
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
> >>> test -d shlib || mkdir shlib
> >>> ( cd shlib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make
> all
> >>> )
> >>> rm -f libreadline.5.0.dylib
> >>> gcc -dynamic -arch_only `/usr/bin/arch` -install_name
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.5.0.dylib
> >>> -current_version 5.0 -compatibility_version 5 -v -o
> libreadline.5.0.dylib
> >>> readline.so vi_mode.so funmap.so keymaps.so parens.so search.so
> rltty.so
> >>> complete.so bind.so isearch.so display.so signals.so util.so kill.so
> >>> undo.so macro.so input.so callback.so terminal.so text.so nls.so
> misc.so
> >>> xmalloc.so history.so histexpand.so histfile.so histsearch.so shell.so
> >>> mbutil.so tilde.so compat.so -lncurses
> >>> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
> >>> Target: x86_64-apple-darwin13.1.0
> >>> Thread model: posix
> >>> clang: error: invalid argument '-compatibility_version 5' only allowed
> >>> with '-dynamiclib'
> >>> make[1]: *** [libreadline.5.0.dylib] Error 1
> >>> make: [shared] Error 2 (ignored)
> >>> ( cd shlib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make
> >>> DESTDIR= install )
> >>> /bin/sh ../support/mkdirs
> /Users/ninjawarrior343/supplibs/src/readline/lib
> >>> rm -f libreadline.5.0.dylib
> >>> gcc -dynamic -arch_only `/usr/bin/arch` -install_name
> >>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.5.0.dylib
> >>> -current_version 5.0 -compatibility_version 5 -v -o
> libreadline.5.0.dylib
> >>> readline.so vi_mode.so funmap.so keymaps.so parens.so search.so
> rltty.so
> >>> complete.so bind.so isearch.so display.so signals.so util.so kill.so
> >>> undo.so macro.so input.so callback.so terminal.so text.so nls.so
> misc.so
> >>> xmalloc.so history.so histexpand.so histfile.so histsearch.so shell.so
> >>> mbutil.so tilde.so compat.so -lncurses
> >>> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
> >>> Target: x86_64-apple-darwin13.1.0
> >>> Thread model: posix
> >>> clang: error: invalid argument '-compatibility_version 5' only allowed
> >>> with '-dynamiclib'
> >>> make[1]: *** [libreadline.5.0.dylib] Error 1
> >>> make: [install-shared] Error 2 (ignored)
> >>>
> >>> It can't read or find libreadline.5.0.dylib (or so I think). I get a
> >>> similar error for ncurses:
> >>>
> >>> gcc -DHAVE_CONFIG_H -I../ncurses -I. -I. -I../include -U_XOPEN_SOURCE
> >>> -D_XOPEN_SOURCE=500 -DSIGWINCH=28 -DNDEBUG
> >>> -I/Users/ninjawarrior343/supplibs/src/ncurses/include/ncurses -O2
> --param
> >>> max-inline-insns-single=1200 -no-cpp-precomp -c
> >>> ../ncurses/./tty/hardscroll.c -o ../objects/hardscroll.o
> >>> clang: warning: argument unused during compilation: '--param
> >>> max-inline-insns-single=1200'
> >>> *error: **unable to open output file '../objects/hardscroll.o': 'Error
> >>> opening*
> >>> * output file '../objects/hardscroll.o': Permission denied'*
> >>> 1 error generated.
> >>> make[1]: *** [../objects/hardscroll.o] Error 1
> >>>
> >>> make: *** [install] Error 2
> >>>
> >>> Then when I tried to copy it, I get the following:
> >>>
> >>> dstanfel:ncurses-5.7 ninjawarrior343$ cp
> >>> $HOME/supplibs/src/ncurses/lib/libncurses.a $HOME/supplibs/lib
> >>>
> >>> cp: /Users/ninjawarrior343/supplibs/src/ncurses/lib/libncurses.a: No
> such
> >>> file or directory
> >>>
> >>> The file was not created. Any help will be greatly appreciated.
> >>>
> >>> Thanks,
> >>>
> >>> David
> >>> _______________________________________________
> >>> gradsusr mailing list
> >>> gradsusr at gradsusr.org
> >>> http://gradsusr.org/mailman/listinfo/gradsusr
> >>>
> >>>
> >>> --
> >>> Jennifer M. Adams
> >>> Center for Ocean-Land-Atmosphere Studies (COLA)
> >>> 111 Research Hall, Mail Stop 2B3
> >>> George Mason University
> >>> 4400 University Drive
> >>> Fairfax, VA 22030
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> _______________________________________________
> >>> gradsusr mailing list
> >>> gradsusr at gradsusr.org
> >>> http://gradsusr.org/mailman/listinfo/gradsusr
> >>>
> >>>
> >> _______________________________________________
> >> gradsusr mailing list
> >> gradsusr at gradsusr.org
> >> http://gradsusr.org/mailman/listinfo/gradsusr
> >>
> >>
> >> --
> >> Jennifer M. Adams
> >> Center for Ocean-Land-Atmosphere Studies (COLA)
> >> 111 Research Hall, Mail Stop 2B3
> >> George Mason University
> >> 4400 University Drive
> >> Fairfax, VA 22030
> >>
> >>
> >>
> >>
> >>
> >>
> >> _______________________________________________
> >> gradsusr mailing list
> >> gradsusr at gradsusr.org
> >> http://gradsusr.org/mailman/listinfo/gradsusr
> >>
> >>
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