[gradsusr] Fwd: reg:wrf installation
malleswararao maguluri
mallesh4science at gmail.com
Tue Mar 12 05:14:02 EDT 2013
---------- Forwarded message ----------
From: malleswararao maguluri <mallesh4science at gmail.com>
Date: Tue, Mar 12, 2013 at 1:35 PM
Subject: Fwd: reg:wrf installation
To: support-netcdf at unidata.ucar.edu
---------- Forwarded message ----------
From: malleswararao maguluri <mallesh4science at gmail.com>
Date: Tue, Mar 12, 2013 at 1:09 PM
Subject: reg:wrf installation
To: Amit Kesarkar <amit.kesarkar at gmail.com>
dear grad users,
I need a little help for wrf installation in my office for testing purpose.
The following steps i have done serially:
*my system configuration *
Fedora 16
i3 64-bit processor
4GB RAM
500GB Hard Disk
1) Configured ZLIB (Success)
2) Configured JASPER (Success)
3) Configured LIBPNG (Success)
4) Installed usiing yum (Success)
gcc.i686 4.6.2-1.fc16 @fedorarepo
gcc-c++.i686 4.6.2-1.fc16 @fedorarepo
gcc-gfortran.i686 4.6.2-1.fc16 @fedorarepo
5) installed intel compiler (l_fcompxe_2013.2.146 with trailed licenced
key) (Success)
6) netcdf-3.6.2
6.1 ./configure (Success)
6.2 after entering *"make"* we are getting the following error.
[root at apsdps netcdf-3.6.2]# make
make all-recursive
make[1]: Entering directory `/wrfpkgs/netcdf-3.6.2'
Making all in f90
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/f90'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/f90'
Making all in fortran
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/fortran'
make all-am
make[3]: Entering directory `/wrfpkgs/netcdf-3.6.2/fortran'
depbase=`echo fort-attio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-attio.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-attio.lo fort-attio.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-attio.lo -MD -MP -MF .deps/fort-attio.Tpo -c fort-attio.c -o
fort-attio.o
depbase=`echo fort-control.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-control.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-control.lo fort-control.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-control.lo -MD -MP -MF .deps/fort-control.Tpo -c fort-control.c -o
fort-control.o
depbase=`echo fort-dim.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-dim.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-dim.lo fort-dim.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-dim.lo -MD -MP -MF .deps/fort-dim.Tpo -c fort-dim.c -o fort-dim.o
depbase=`echo fort-genatt.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-genatt.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-genatt.lo fort-genatt.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-genatt.lo -MD -MP -MF .deps/fort-genatt.Tpo -c fort-genatt.c -o
fort-genatt.o
depbase=`echo fort-geninq.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-geninq.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-geninq.lo fort-geninq.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-geninq.lo -MD -MP -MF .deps/fort-geninq.Tpo -c fort-geninq.c -o
fort-geninq.o
depbase=`echo fort-genvar.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-genvar.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-genvar.lo fort-genvar.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-genvar.lo -MD -MP -MF .deps/fort-genvar.Tpo -c fort-genvar.c -o
fort-genvar.o
depbase=`echo fort-lib.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-lib.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-lib.lo fort-lib.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-lib.lo -MD -MP -MF .deps/fort-lib.Tpo -c fort-lib.c -o fort-lib.o
depbase=`echo fort-misc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-misc.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-misc.lo fort-misc.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-misc.lo -MD -MP -MF .deps/fort-misc.Tpo -c fort-misc.c -o
fort-misc.o
depbase=`echo fort-v2compat.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-v2compat.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-v2compat.lo fort-v2compat.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-v2compat.lo -MD -MP -MF .deps/fort-v2compat.Tpo -c fort-v2compat.c
-o fort-v2compat.o
depbase=`echo fort-vario.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-vario.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-vario.lo fort-vario.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-vario.lo -MD -MP -MF .deps/fort-vario.Tpo -c fort-vario.c -o
fort-vario.o
depbase=`echo fort-var1io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-var1io.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-var1io.lo fort-var1io.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-var1io.lo -MD -MP -MF .deps/fort-var1io.Tpo -c fort-var1io.c -o
fort-var1io.o
depbase=`echo fort-varaio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-varaio.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-varaio.lo fort-varaio.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-varaio.lo -MD -MP -MF .deps/fort-varaio.Tpo -c fort-varaio.c -o
fort-varaio.o
depbase=`echo fort-varmio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-varmio.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-varmio.lo fort-varmio.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-varmio.lo -MD -MP -MF .deps/fort-varmio.Tpo -c fort-varmio.c -o
fort-varmio.o
depbase=`echo fort-varsio.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.
-I.. -I. -I../libsrc -g -O2 -MT fort-varsio.lo -MD -MP -MF
"$depbase.Tpo" -c -o fort-varsio.lo fort-varsio.c; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I. -I.. -I. -I../libsrc -g -O2
-MT fort-varsio.lo -MD -MP -MF .deps/fort-varsio.Tpo -c fort-varsio.c -o
fort-varsio.o
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libnetcdff.la
fort-attio.lo fort-control.lo fort-dim.lo fort-genatt.lo fort-geninq.lo
fort-genvar.lo fort-lib.lo fort-misc.lo fort-v2compat.lo fort-vario.lo
fort-var1io.lo fort-varaio.lo fort-varmio.lo fort-varsio.lo ../f90/
libnetcdff90.la
libtool: link: rm -fr .libs/libnetcdff.a .libs/libnetcdff.la
libtool: link: (cd .libs/libnetcdff.lax/libnetcdff90.a && ar x
/wrfpkgs/netcdf-3.6.2/fortran/../f90/.libs/libnetcdff90.a)
libtool: link: ar cru .libs/libnetcdff.a fort-attio.o fort-control.o
fort-dim.o fort-genatt.o fort-geninq.o fort-genvar.o fort-lib.o fort-misc.o
fort-v2compat.o fort-vario.o fort-var1io.o fort-varaio.o fort-varmio.o
fort-varsio.o .libs/libnetcdff.lax/libnetcdff90.a/typeSizes.o
.libs/libnetcdff.lax/libnetcdff90.a/netcdf.o
libtool: link: ranlib .libs/libnetcdff.a
libtool: link: rm -fr .libs/libnetcdff.lax
libtool: link: creating libnetcdff.la
libtool: link: ( cd ".libs" && rm -f "libnetcdff.la" && ln -s "../
libnetcdff.la" "libnetcdff.la" )
make[3]: Leaving directory `/wrfpkgs/netcdf-3.6.2/fortran'
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/fortran'
Making all in libsrc
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/libsrc'
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o
libnetcdf.la-rpath /usr/local/lib -version-info 4:0:0 -no-undefined
attr.lo ncx.lo
putget.lo dim.lo error.lo libvers.lo nc.lo string.lo v1hpg.lo var.lo
posixio.lo libnetcdf2.la ../fortran/libnetcdff.la
libtool: link: rm -fr .libs/libnetcdf.a .libs/libnetcdf.la.libs/libnetcdf.lai
libtool: link: (cd .libs/libnetcdf.lax/libnetcdf2.a && ar x
/wrfpkgs/netcdf-3.6.2/libsrc/./.libs/libnetcdf2.a)
libtool: link: (cd .libs/libnetcdf.lax/libnetcdff.a && ar x
/wrfpkgs/netcdf-3.6.2/libsrc/../fortran/.libs/libnetcdff.a)
libtool: link: ar cru .libs/libnetcdf.a attr.o ncx.o putget.o dim.o
error.o libvers.o nc.o string.o v1hpg.o var.o posixio.o
.libs/libnetcdf.lax/libnetcdf2.a/v2i.o
.libs/libnetcdf.lax/libnetcdff.a/fort-genatt.o
.libs/libnetcdf.lax/libnetcdff.a/fort-var1io.o
.libs/libnetcdf.lax/libnetcdff.a/fort-misc.o
.libs/libnetcdf.lax/libnetcdff.a/fort-varmio.o
.libs/libnetcdf.lax/libnetcdff.a/fort-varsio.o
.libs/libnetcdf.lax/libnetcdff.a/fort-control.o
.libs/libnetcdf.lax/libnetcdff.a/fort-genvar.o
.libs/libnetcdf.lax/libnetcdff.a/fort-geninq.o
.libs/libnetcdf.lax/libnetcdff.a/fort-v2compat.o
.libs/libnetcdf.lax/libnetcdff.a/fort-dim.o
.libs/libnetcdf.lax/libnetcdff.a/fort-attio.o
.libs/libnetcdf.lax/libnetcdff.a/fort-lib.o
.libs/libnetcdf.lax/libnetcdff.a/typeSizes.o
.libs/libnetcdf.lax/libnetcdff.a/fort-vario.o
.libs/libnetcdf.lax/libnetcdff.a/netcdf.o
.libs/libnetcdf.lax/libnetcdff.a/fort-varaio.o
libtool: link: ranlib .libs/libnetcdf.a
libtool: link: rm -fr .libs/libnetcdf.lax
libtool: link: creating libnetcdf.la
libtool: link: ( cd ".libs" && rm -f "libnetcdf.la" && ln -s "../
libnetcdf.la" "libnetcdf.la" )
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/libsrc'
Making all in nctest
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/nctest'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/nctest'
Making all in ncgen
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/ncgen'
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o ncgen main.o
load.o ncgentab.o escapes.o getfill.o init.o genlib.o ../libsrc/libnetcdf.la
libtool: link: gcc -g -O2 -o ncgen main.o load.o ncgentab.o escapes.o
getfill.o init.o genlib.o ../libsrc/.libs/libnetcdf.a
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/ncgen'
Making all in ncdump
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/ncdump'
/bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o ncdump ncdump.o
vardata.o dumplib.o -lm ../libsrc/libnetcdf.la
libtool: link: gcc -g -O2 -o ncdump ncdump.o vardata.o dumplib.o -lm
../libsrc/.libs/libnetcdf.a
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/ncdump'
Making all in nf_test
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/nf_test'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/nf_test'
Making all in cxx
make[2]: Entering directory `/wrfpkgs/netcdf-3.6.2/cxx'
depbase=`echo ncvalues.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`; \
if /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.
-I.. -I../fortran -DDEBUG -I../libsrc -g -O2 -MT ncvalues.lo -MD -MP
-MF "$depbase.Tpo" -c -o ncvalues.lo ncvalues.cpp; \
then mv -f "$depbase.Tpo" "$depbase.Plo"; else rm -f "$depbase.Tpo"; exit
1; fi
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I. -I.. -I../fortran -DDEBUG
-I../libsrc -g -O2 -MT ncvalues.lo -MD -MP -MF .deps/ncvalues.Tpo -c
ncvalues.cpp -o ncvalues.o
ncvalues.cpp: In member function 'virtual char*
NcValues_ncbyte::as_string(long int) const':
ncvalues.cpp:238:60: error: 'strncpy' was not declared in this scope
ncvalues.cpp: In member function 'virtual char*
NcValues_char::as_string(long int) const':
ncvalues.cpp:246:60: error: 'strncpy' was not declared in this scope
make[2]: *** [ncvalues.lo] Error 1
make[2]: Leaving directory `/wrfpkgs/netcdf-3.6.2/cxx'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/wrfpkgs/netcdf-3.6.2'
make: *** [all] Error 2
please try to resolve this error.
--
M. MALLESWARA RAO
M.Tech (Atmospheric Science)
Young Professional in Cyclone Models
APSDPS, AP Secreteriat, Hyderabad
--
M. MALLESWARA RAO
M.Tech (Atmospheric Science)
Young Professional in Cyclone Models
APSDPS, AP Secreteriat, Hyderabad
--
M. MALLESWARA RAO
M.Tech (Atmospheric Science)
Young Professional in Cyclone Models
APSDPS, AP Secreteriat, Hyderabad
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