[gradsusr] Issue: *** glibc detected *** grads: free(): corrupted unsorted chunks

[Jeff Duda]

That type of error output usually suggests a memory overload or your SDF
has a variable name that grads doesn't like (e.g., a syntax error).

On Thu, Dec 3, 2015 at 3:00 PM, Illeana Gomez Leal <ig238 at cornell.edu>
wrote:

> Dear all,
>
> We have just installed GrADS and I am trying to open a NetCDF file, but it
> doesn’t work and GrADS crashes.
> This is the message I get, do you have any clue?
> Thank you very much.
>
> Sincerely,
> Illeana
> ___
>
> Grid Analysis and Display System (GrADS) Version 2.0.2
> Copyright (c) 1988-2011 by Brian Doty and the
> Institute for Global Environment and Society (IGES)
> GrADS comes with ABSOLUTELY NO WARRANTY
> See file COPYRIGHT for more information
>
> Config: v2.0.2 little-endian readline printim grib2 netcdf hdf4-sds hdf5
> opendap-grids,stn geotiff shapefile
> Issue 'q config' command for more detailed configuration information
> Landscape mode? ('n' for portrait):  y
> GX Package Initialization: Size = 11 8.5
> ga-> sdfopen /data/ileal/PlaSim/datap/pe/r10/p10/SEr10p10_1_195.nc
> Scanning self-describing file:
>  /data/ileal/PlaSim/datap/pe/r10/p10/SEr10p10_1_195.nc
> *** glibc detected *** grads: free(): corrupted unsorted chunks:
> 0x0000000002670660 ***
> ======= Backtrace: =========
> /lib64/libc.so.6[0x30f1875f4e]
> /lib64/libc.so.6[0x30f1878ca0]
> grads(gree+0x2bb)[0x4fab92]
> grads(sdfdeflev+0xa03)[0x5323c8]
> grads(gadsdf+0xd69)[0x535f1d]
> grads(gasdfopen+0x1f7)[0x5388cc]
> grads(gacmd+0x1a71)[0x52c829]
> grads(main+0xa7a)[0x4975ab]
> /lib64/libc.so.6(__libc_start_main+0xfd)[0x30f181ed5d]
> grads[0x4960a9]
> ======= Memory map: ========
> 00400000-00bcb000 r-xp 00000000 08:03 11796720
> /usr/local/bin/grads/grads
> 00dca000-00e43000 rw-p 007ca000 08:03 11796720
> /usr/local/bin/grads/grads
> 00e43000-0114f000 rw-p 00000000 00:00 0
> 0262a000-0268e000 rw-p 00000000 00:00 0
>  [heap]
> 30f1400000-30f1420000 r-xp 00000000 08:03 11010051
> /lib64/ld-2.12.so
> 30f161f000-30f1620000 r--p 0001f000 08:03 11010051
> /lib64/ld-2.12.so
> 30f1620000-30f1621000 rw-p 00020000 08:03 11010051
> /lib64/ld-2.12.so
> 30f1621000-30f1622000 rw-p 00000000 00:00 0
> 30f1800000-30f198a000 r-xp 00000000 08:03 11010183
> /lib64/libc-2.12.so
> 30f198a000-30f1b8a000 ---p 0018a000 08:03 11010183
> /lib64/libc-2.12.so
> 30f1b8a000-30f1b8e000 r--p 0018a000 08:03 11010183
> /lib64/libc-2.12.so
> 30f1b8e000-30f1b8f000 rw-p 0018e000 08:03 11010183
> /lib64/libc-2.12.so
> 30f1b8f000-30f1b94000 rw-p 00000000 00:00 0
> 30f1c00000-30f1c17000 r-xp 00000000 08:03 11010199
> /lib64/libpthread-2.12.so
> 30f1c17000-30f1e17000 ---p 00017000 08:03 11010199
> /lib64/libpthread-2.12.so
> 30f1e17000-30f1e18000 r--p 00017000 08:03 11010199
> /lib64/libpthread-2.12.so
> 30f1e18000-30f1e19000 rw-p 00018000 08:03 11010199
> /lib64/libpthread-2.12.so
> 30f1e19000-30f1e1d000 rw-p 00000000 00:00 0
> 30f2000000-30f2002000 r-xp 00000000 08:03 11010386
> /lib64/libdl-2.12.so
> 30f2002000-30f2202000 ---p 00002000 08:03 11010386
> /lib64/libdl-2.12.so
> 30f2202000-30f2203000 r--p 00002000 08:03 11010386
> /lib64/libdl-2.12.so
> 30f2203000-30f2204000 rw-p 00003000 08:03 11010386
> /lib64/libdl-2.12.so
> 30f2400000-30f2407000 r-xp 00000000 08:03 11010218
> /lib64/librt-2.12.so
> 30f2407000-30f2606000 ---p 00007000 08:03 11010218
> /lib64/librt-2.12.so
> 30f2606000-30f2607000 r--p 00006000 08:03 11010218
> /lib64/librt-2.12.so
> 30f2607000-30f2608000 rw-p 00007000 08:03 11010218
> /lib64/librt-2.12.so
> 30f2800000-30f2883000 r-xp 00000000 08:03 11010383
> /lib64/libm-2.12.so
> 30f2883000-30f2a82000 ---p 00083000 08:03 11010383
> /lib64/libm-2.12.so
> 30f2a82000-30f2a83000 r--p 00082000 08:03 11010383
> /lib64/libm-2.12.so
> 30f2a83000-30f2a84000 rw-p 00083000 08:03 11010383
> /lib64/libm-2.12.so
> 30f5000000-30f5002000 r-xp 00000000 08:03 11273866
> /usr/lib64/libXau.so.6.0.0
> 30f5002000-30f5202000 ---p 00002000 08:03 11273866
> /usr/lib64/libXau.so.6.0.0
> 30f5202000-30f5203000 rw-p 00002000 08:03 11273866
> /usr/lib64/libXau.so.6.0.0
> 30f7800000-30f7809000 r-xp 00000000 08:03 11277012
> /usr/lib64/libXrender.so.1.3.0
> 30f7809000-30f7a08000 ---p 00009000 08:03 11277012
> /usr/lib64/libXrender.so.1.3.0
> 30f7a08000-30f7a09000 rw-p 00008000 08:03 11277012
> /usr/lib64/libXrender.so.1.3.0
> 30f8000000-30f8005000 r-xp 00000000 08:03 11279401
> /usr/lib64/libXfixes.so.3.1.0
> 30f8005000-30f8204000 ---p 00005000 08:03 11279401
> /usr/lib64/libXfixes.so.3.1.0
> 30f8204000-30f8205000 rw-p 00004000 08:03 11279401
> /usr/lib64/libXfixes.so.3.1.0
> 30fa400000-30fa409000 r-xp 00000000 08:03 11279895
> /usr/lib64/libXcursor.so.1.0.2
> 30fa409000-30fa609000 ---p 00009000 08:03 11279895
> /usr/lib64/libXcursor.so.1.0.2
> 30fa609000-30fa60a000 rw-p 00009000 08:03 11279895
> /usr/lib64/libXcursor.so.1.0.2
> 30fcc00000-30fcc16000 r-xp 00000000 08:03 11010432
> /lib64/libgcc_s-4.4.7-20120601.so.1
> 30fcc16000-30fce15000 ---p 00016000 08:03 11010432
> /lib64/libgcc_s-4.4.7-20120601.so.1
> 30fce15000-30fce16000 rw-p 00015000 08:03 11010432
> /lib64/libgcc_s-4.4.7-20120601.so.1
> 30fd800000-30fd8e8000 r-xp 00000000 08:03 11287938
> /usr/lib64/libstdc++.so.6.0.13
> 30fd8e8000-30fdae8000 ---p 000e8000 08:03 11287938
> /usr/lib64/libstdc++.so.6.0.13
> 30fdae8000-30fdaef000 r--p 000e8000 08:03 11287938
> /usr/lib64/libstdc++.so.6.0.13
> 30fdaef000-30fdaf1000 rw-p 000ef000 08:03 11287938
> /usr/lib64/libstdc++.so.6.0.13
> 30fdaf1000-30fdb06000 rw-p 00000000 00:00 0
> 3ed5600000-3ed5737000 r-xp 00000000 08:03 11291805
> /usr/lib64/libX11.so.6.3.0
> 3ed5737000-3ed5937000 ---p 00137000 08:03 11291805
> /usr/lib64/libX11.so.6.3.0
> 3ed5937000-3ed593d000 rw-p 00137000 08:03 11291805
> /usr/lib64/libX11.so.6.3.0
> 3ed6200000-3ed621e000 r-xp 00000000 08:03 11291717
> /usr/lib64/libxcb.so.1.1.0
> 3ed621e000-3ed641d000 ---p 0001e000 08:03 11291717
> /usr/lib64/libxcb.so.1.1.0
> 3ed641d000-3ed641e000 rw-p 0001d000 08:03 11291717
> /usr/lib64/libxcb.so.1.1.0
> 7fc220000000-7fc220021000 rw-p 00000000 00:00 0
> 7fc220021000-7fc224000000 ---p 00000000 00:00 0
> 7fc226f44000-7fc226fc6000 rw-p 00000000 00:00 0
> 7fc226fc6000-7fc22ce57000 r--p 00000000 08:03 11290812
> /usr/lib/locale/locale-archive
> 7fc22ce57000-7fc22d040000 rw-p 00000000 00:00 0
> 7fc22d040000-7fc22d04c000 r-xp 00000000 08:03 11010658
> /lib64/libnss_files-2.12.so
> 7fc22d04c000-7fc22d24c000 ---p 0000c000 08:03 11010658
> /lib64/libnss_files-2.12.so
> 7fc22d24c000-7fc22d24d000 r--p 0000c000 08:03 11010658
> /lib64/libnss_files-2.12.so
> 7fc22d24d000-7fc22d24e000 rw-p 0000d000 08:03 11010658
> /lib64/libnss_files-2.12.so
> 7fc22d261000-7fc22d268000 rw-p 00000000 00:00 0
> 7fc22d272000-7fc22d279000 r--s 00000000 08:03 11290692
> /usr/lib64/gconv/gconv-modules.cacheAbandon
>
>
>
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>


-- 
Jeff Duda
Graduate research assistant
University of Oklahoma School of Meteorology
Center for Analysis and Prediction of Storms
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