[gradsusr] Errors installing readline and ncurses supplies

Mon Jun 16 22:28:55 EDT 2014

I downloaded and unpacked the files and changed the GADDIR directory. I
still can't open the .nc file though. Here is the command line (in GrADS):

ga-> sdfopen ocean_topaz_wc_btm.nc.0000

Scanning self-describing file:  ocean_topaz_wc_btm.nc.0000

udunits(3): Couldn't open units database
"University/Research_job/supplibs/udunits.dat": No such file or directory

gadsdf: UDUNITS package initialization failure.

ga-> quit

GX Package Terminated

dstanfel:bin ninjawarrior343$ cd

dstanfel:~ ninjawarrior343$ cd University/Research_job/supplibs/

dstanfel:supplibs ninjawarrior343$ ls

font0.dat font3.dat hires tables

font1.dat font4.dat lowres tarfiles

font2.dat font5.dat mres udunits.dat

You can see that udunits.dat is in the specified path. Where did I go wrong?

Thanks,

David

On Mon, Jun 16, 2014 at 4:24 PM, Jennifer Adams <jma at cola.iges.org> wrote:

> Take a look at the Downloads web page (
> http://www.iges.org/grads/downloads.html)  -- scroll down to the part
> about "Supplementary Files" . The udunits file GrADS is looking for is in
> data2.tar.gz.
> --Jennifer
>
>
>
> On Jun 16, 2014, at 4:47 PM, David Stanfel wrote:
>
> Thanks for the reply,
>
>  I downloaded that and tried to open a netcdf file (.nc) and got the
> following result:
>
> ga-> sdfopen atmos_4xdaily_instant.nc
> Scanning self-describing file:  atmos_4xdaily_instant.nc
> udunits(3): Couldn't open units database
> "/usr/local/lib/grads/udunits.dat": No such file or directory
> gadsdf: UDUNITS package initialization failure.
>
> How do I install the udunits package?
>
> Thanks,
>
> David
>
>
> On Mon, Jun 16, 2014 at 2:26 PM, Jennifer Adams <jma at cola.iges.org> wrote:
>
>> Please try the pre-compiled binaries instead of building from source… the
>> 10.7 build should work fine on Mavericks:
>> ftp://cola.gmu.edu/grads/2.1/grads-2.1.a2-bin-darwin11.4.tar.gz
>>
>> -Jennifer
>>
>> On Jun 16, 2014, at 4:07 PM, David Stanfel wrote:
>>
>> Hello,
>>
>> I am new to GrADS and to the Unix language. I run Mac OS X Mavericks.
>> When I tried to install the readline supplib I got the following error:
>>
>> mv tilde.o tilde.so
>> rm -f compat.so
>> gcc -c -DHAVE_CONFIG_H   -I. -I.. -I.. -DRL_LIBRARY_VERSION='"5.0"' -g -O
>> -fno-common -o compat.o ../compat.c
>> mv compat.o compat.so
>> rm -f libreadline.5.0.dylib
>> gcc -dynamic -arch_only `/usr/bin/arch` -install_name
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.5.0.dylib
>> -current_version 5.0 -compatibility_version 5 -v -o libreadline.5.0.dylib
>> readline.so vi_mode.so funmap.so keymaps.so parens.so search.so rltty.so
>> complete.so bind.so isearch.so display.so signals.so util.so kill.so
>> undo.so macro.so input.so callback.so terminal.so text.so nls.so misc.so
>> xmalloc.so history.so histexpand.so histfile.so histsearch.so shell.so
>> mbutil.so tilde.so compat.so -lncurses
>> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
>> Target: x86_64-apple-darwin13.1.0
>> Thread model: posix
>> clang: error: invalid argument '-compatibility_version 5' only allowed
>> with '-dynamiclib'
>> make[1]: *** [libreadline.5.0.dylib] Error 1
>> make: [shared] Error 2 (ignored)
>> /bin/sh ./support/mkinstalldirs
>> /Users/ninjawarrior343/supplibs/src/readline/include \
>> /Users/ninjawarrior343/supplibs/src/readline/include/readline
>> /Users/ninjawarrior343/supplibs/src/readline/lib \
>>  /Users/ninjawarrior343/supplibs/src/readline/info
>> /Users/ninjawarrior343/supplibs/src/readline/man/man3
>> mkdir -p -- /Users/ninjawarrior343/supplibs/src/readline/include
>> /Users/ninjawarrior343/supplibs/src/readline/include/readline
>> /Users/ninjawarrior343/supplibs/src/readline/lib
>> /Users/ninjawarrior343/supplibs/src/readline/info
>> /Users/ninjawarrior343/supplibs/src/readline/man/man3
>> for f in readline.h chardefs.h keymaps.h history.h tilde.h rlstdc.h
>> rlconf.h rltypedefs.h; do \
>>  /usr/bin/install -c -m 644 ./$f
>> /Users/ninjawarrior343/supplibs/src/readline/include/readline ; \
>>  done
>> ( if test -d doc ; then \
>>  cd doc && \
>> /Applications/Xcode.app/Contents/Developer/usr/bin/make
>> infodir=/Users/ninjawarrior343/supplibs/src/readline/info DESTDIR= install;
>> \
>>    fi )
>> /bin/sh ../support/mkdirs
>> /Users/ninjawarrior343/supplibs/src/readline/info
>> /Users/ninjawarrior343/supplibs/src/readline/man/man3
>> if test -n "" ; then \
>> /bin/sh ../support/mkdirs  ; \
>>  fi
>> if test -f readline.info; then \
>> /usr/bin/install -c -m 644 readline.info
>> /Users/ninjawarrior343/supplibs/src/readline/info/readline.info; \
>>  else \
>>  /usr/bin/install -c -m 644 ./readline.info
>> /Users/ninjawarrior343/supplibs/src/readline/info/readline.info; \
>>  fi
>> if test -f rluserman.info; then \
>> /usr/bin/install -c -m 644 rluserman.info
>> /Users/ninjawarrior343/supplibs/src/readline/info/rluserman.info; \
>>  else \
>>  /usr/bin/install -c -m 644 ./rluserman.info
>> /Users/ninjawarrior343/supplibs/src/readline/info/rluserman.info; \
>>  fi
>> if test -f history.info; then \
>> /usr/bin/install -c -m 644 history.info
>> /Users/ninjawarrior343/supplibs/src/readline/info/history.info; \
>>  else \
>>  /usr/bin/install -c -m 644 ./history.info
>> /Users/ninjawarrior343/supplibs/src/readline/info/history.info; \
>>  fi
>> if /bin/sh -c 'install-info --version' >/dev/null 2>&1; then \
>> install-info
>> --dir-file=/Users/ninjawarrior343/supplibs/src/readline/info/dir \
>>  /Users/ninjawarrior343/supplibs/src/readline/info/readline.info ; \
>>  install-info
>> --dir-file=/Users/ninjawarrior343/supplibs/src/readline/info/dir \
>>  /Users/ninjawarrior343/supplibs/src/readline/info/history.info ; \
>>  install-info
>> --dir-file=/Users/ninjawarrior343/supplibs/src/readline/info/dir \
>>  /Users/ninjawarrior343/supplibs/src/readline/info/rluserman.info ; \
>>  else true; fi
>> /usr/bin/install -c -m 644 ./readline.3
>> /Users/ninjawarrior343/supplibs/src/readline/man/man3/readline.3
>> /usr/bin/install -c -m 644 ./history.3
>> /Users/ninjawarrior343/supplibs/src/readline/man/man3/history.3
>> if test -n "" ; then \
>>  if test -f readline.html; then \
>>  /usr/bin/install -c -m 644 readline.html /readline.html; \
>>  else \
>> /usr/bin/install -c -m 644 ./readline.html /readline.html; \
>>  fi ; \
>>  if test -f history.html; then \
>> /usr/bin/install -c -m 644 history.html /history.html; \
>>  else \
>>  /usr/bin/install -c -m 644 ./history.html /history.html; \
>>  fi ; \
>> if test -f rluserman.html; then \
>>  /usr/bin/install -c -m 644 rluserman.html /rluserman.html; \
>>  else \
>>  /usr/bin/install -c -m 644 ./rluserman.html /rluserman.html; \
>>  fi ; \
>> fi
>> mv /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.old
>> mv: rename /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
>> to /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.old: No
>> such file or directory
>> make: [install-static] Error 1 (ignored)
>> /usr/bin/install -c -m 644 libreadline.a
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
>> test -n "ranlib" && ranlib
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.a
>> mv /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.old
>> mv: rename /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
>> to /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.old: No such
>> file or directory
>> make: [install-static] Error 1 (ignored)
>> /usr/bin/install -c -m 644 libhistory.a
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
>> test -n "ranlib" && ranlib
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libhistory.a
>> test -d shlib || mkdir shlib
>> ( cd shlib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make  all
>> )
>> rm -f libreadline.5.0.dylib
>> gcc -dynamic -arch_only `/usr/bin/arch` -install_name
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.5.0.dylib
>> -current_version 5.0 -compatibility_version 5 -v -o libreadline.5.0.dylib
>> readline.so vi_mode.so funmap.so keymaps.so parens.so search.so rltty.so
>> complete.so bind.so isearch.so display.so signals.so util.so kill.so
>> undo.so macro.so input.so callback.so terminal.so text.so nls.so misc.so
>> xmalloc.so history.so histexpand.so histfile.so histsearch.so shell.so
>> mbutil.so tilde.so compat.so -lncurses
>> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
>> Target: x86_64-apple-darwin13.1.0
>> Thread model: posix
>> clang: error: invalid argument '-compatibility_version 5' only allowed
>> with '-dynamiclib'
>> make[1]: *** [libreadline.5.0.dylib] Error 1
>> make: [shared] Error 2 (ignored)
>> ( cd shlib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make
>> DESTDIR= install )
>> /bin/sh ../support/mkdirs /Users/ninjawarrior343/supplibs/src/readline/lib
>> rm -f libreadline.5.0.dylib
>> gcc -dynamic -arch_only `/usr/bin/arch` -install_name
>> /Users/ninjawarrior343/supplibs/src/readline/lib/libreadline.5.0.dylib
>> -current_version 5.0 -compatibility_version 5 -v -o libreadline.5.0.dylib
>> readline.so vi_mode.so funmap.so keymaps.so parens.so search.so rltty.so
>> complete.so bind.so isearch.so display.so signals.so util.so kill.so
>> undo.so macro.so input.so callback.so terminal.so text.so nls.so misc.so
>> xmalloc.so history.so histexpand.so histfile.so histsearch.so shell.so
>> mbutil.so tilde.so compat.so -lncurses
>> Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
>> Target: x86_64-apple-darwin13.1.0
>> Thread model: posix
>> clang: error: invalid argument '-compatibility_version 5' only allowed
>> with '-dynamiclib'
>> make[1]: *** [libreadline.5.0.dylib] Error 1
>> make: [install-shared] Error 2 (ignored)
>>
>> It can't read or find libreadline.5.0.dylib (or so I think). I get a
>> similar error for ncurses:
>>
>> gcc -DHAVE_CONFIG_H -I../ncurses -I. -I. -I../include  -U_XOPEN_SOURCE
>> -D_XOPEN_SOURCE=500 -DSIGWINCH=28 -DNDEBUG
>> -I/Users/ninjawarrior343/supplibs/src/ncurses/include/ncurses -O2 --param
>> max-inline-insns-single=1200  -no-cpp-precomp -c
>> ../ncurses/./tty/hardscroll.c -o ../objects/hardscroll.o
>> clang: warning: argument unused during compilation: '--param
>> max-inline-insns-single=1200'
>> *error: **unable to open output file '../objects/hardscroll.o': 'Error
>> opening*
>> *      output file '../objects/hardscroll.o': Permission denied'*
>> 1 error generated.
>>  make[1]: *** [../objects/hardscroll.o] Error 1
>>
>> make: *** [install] Error 2
>>
>> Then when I tried to copy it, I get the following:
>>
>> dstanfel:ncurses-5.7 ninjawarrior343$ cp
>> $HOME/supplibs/src/ncurses/lib/libncurses.a $HOME/supplibs/lib
>>
>> cp: /Users/ninjawarrior343/supplibs/src/ncurses/lib/libncurses.a: No such
>> file or directory
>>
>> The file was not created. Any help will be greatly appreciated.
>>
>> Thanks,
>>
>> David
>> _______________________________________________
>> gradsusr mailing list
>> gradsusr at gradsusr.org
>> http://gradsusr.org/mailman/listinfo/gradsusr
>>
>>
>>  --
>> Jennifer M. Adams
>> Center for Ocean-Land-Atmosphere Studies (COLA)
>> 111 Research Hall, Mail Stop 2B3
>> George Mason University
>> 4400 University Drive
>> Fairfax, VA 22030
>>
>>
>>
>>
>>
>>
>> _______________________________________________
>> gradsusr mailing list
>> gradsusr at gradsusr.org
>> http://gradsusr.org/mailman/listinfo/gradsusr
>>
>>
> _______________________________________________
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>
>
> --
> Jennifer M. Adams
> Center for Ocean-Land-Atmosphere Studies (COLA)
> 111 Research Hall, Mail Stop 2B3
> George Mason University
> 4400 University Drive
> Fairfax, VA 22030
>
>
>
>
>
>
> _______________________________________________
> gradsusr mailing list
> gradsusr at gradsusr.org
> http://gradsusr.org/mailman/listinfo/gradsusr
>
>
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